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| Status |
Public on Feb 14, 2024 |
| Title |
RNA-seq based in vivo transcriptomes of Korean fir (Abies koreana) with enhanced drought tolerance by Aureobasidium pullulans AK10 |
| Organism |
Abies koreana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The conservation of the endangered Korean fir, Abies koreana, is of critical ecological importance. In our previous study, a yeast-like fungus identified as Aureobasidium pullulans AK10, was isolated and shown to enhance drought tolerance in A. koreana seedlings. In this study, the effectiveness of A. pullulans AK10 treatment in enhancing drought tolerance in A. koreana was confirmed. Furthermore, using transcriptome analysis, we compared A. koreana seedlings treated with A. pullulans AK10 to untreated controls under drought conditions to elucidate the molecular responses involved in increased drought tolerance.
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| Overall design |
To induce drought stress tolerance, Korean fir seedlings were treated three times with AK10. Drought stress was simulated by withholding water. YPD broth containing 250 μg/ml Tween 20 was used as control. Three replicates were used for each group.
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| Contributor(s) |
Park J, Mannaa M, Han G, Jung H, Kim J, Park AR, Seo Y |
| Citation(s) |
38326956 |
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| Submission date |
Nov 21, 2023 |
| Last update date |
Feb 15, 2024 |
| Contact name |
Jungwook Park |
| E-mail(s) |
jjuwoogi@pusan.ac.kr
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| Organization name |
Pusan National University
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| Department |
Microbiology
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| Street address |
Pusan National University, 2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, Korea
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| City |
Busan |
| ZIP/Postal code |
ASI|KR|KS012|PUSAN |
| Country |
South Korea |
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| Platforms (1) |
| GPL33945 |
Illumina HiSeq 2000 (Abies koreana) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA1043572 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE248350_RAW.tar |
75.8 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
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