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Series GSE247878 Query DataSets for GSE247878
Status Public on Sep 08, 2024
Title Convergent evolution of MDP-monocyte differentiation in adult skin permits repair of the Langerhans cell network [scRNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Langerhans cells (LCs) are a unique population of phagocytes programmed within embryonic skin to maintain tissue and immunological homeostasis at the epidermal barrier site. Unique amongst tissue-resident macrophages, LCs play roles in skin innervation and repair, while also functioning as migrating professional antigen presenting cells, a capability classically assigned to dendritic cells (DC). We current lack insight into the molecular pathways that determine this dichotomy, when they are established, and whether precursors recruited to the adult skin niche access the same instructive signals laid down in utero. Tracking differentiation of monocyte-derived (m)LCs after destruction of embryo-derived cells in murine adult skin, revealed intrinsic intra-epidermal heterogeneity and selection of MDP-monocytes to by-pass gene programmes specifying a macrophage fate. Adopting a process unique to adult skin, subsequent extrinsic specification of EpCAM+ precursors via follicular Notch ligands, and aryl hydrocarbon receptor (Ahr) signalling, combined to determine commitment to resident mLCs. Using a unique human LC dataset, we demonstrated that embryo-derived (e)LCs in newborn human skin retained transcriptional evidence of their macrophage origin, which was superseded by a distinct DC-like immune modules following proliferation in infant skin. Thus, convergent differentiation of monocytes within adult skin exploits novel molecular pathways to replicate conditioning of eLC towards more immunogenic DC-like cells within post-natal skin.
 
Overall design Lethally irradiated male CD45.2 C57BL/6 mice received female CD45.1 C57BL/6 bone marrow cells, CD4 T cells, with CD8 Matahari (Mh) T cells administered by intravenous injection through the tail vein. Single-cell RNA-sequencing (scRNA-seq) was carried out on donor and host CD11b+MHCII+ myeloid cells, as well as CD45- keratinocytes FACS purified from the epidermis 3 weeks post-BMT using the 10X Genomics platform.
 
Contributor(s) Henderson S, Appios A, Davies J, Polak M, Bennett C
Citation(s) 39241057
Submission date Nov 15, 2023
Last update date Dec 09, 2024
Contact name Stephen Henderson
E-mail(s) s.henderson@ucl.ac.uk
Organization name University College London
Department Cancer Institute
Lab Cancer Institute Bioinformatics Hub
Street address Paul O'Gorman Building
City London
ZIP/Postal code WC1E 6DD
Country United Kingdom
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (7)
GSM7902573 monocyte derived, replicate1
GSM7902574 monocyte derived, replicate2
GSM7902575 monocyte derived, replicate3
This SubSeries is part of SuperSeries:
GSE247879 Convergent evolution of MDP-monocyte differentiation in adult skin permits repair of the Langerhans cell network
Relations
BioProject PRJNA1040858

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE247878_metadata.BMT.tsv.gz 857.7 Kb (ftp)(http) TSV
GSE247878_metadata.Host.tsv.gz 28.5 Kb (ftp)(http) TSV
GSE247878_metadata.KC.tsv.gz 298.4 Kb (ftp)(http) TSV
GSE247878_normalised_expression.BMT.tsv.gz 257.8 Mb (ftp)(http) TSV
GSE247878_normalised_expression.Host.tsv.gz 13.0 Mb (ftp)(http) TSV
GSE247878_normalised_expression.KC.tsv.gz 138.3 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA

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