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| Status |
Public on Jul 11, 2024 |
| Title |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac |
| Organism |
Solanum lycopersicum |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38968127 |
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| Submission date |
Oct 16, 2023 |
| Last update date |
Oct 12, 2024 |
| Contact name |
Jing An |
| Organization name |
Universite Paris Saclay
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| Street address |
630 Rue Noetzlin
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| City |
Paris |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platforms (2) |
| GPL21762 |
Illumina NextSeq 500 (Solanum lycopersicum) |
| GPL27957 |
Illumina NovaSeq 6000 (Solanum lycopersicum) |
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| Samples (51)
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| GSM7844493 |
M82 ChIP-seq_H3K4me2 Rep1 |
| GSM7844494 |
M82 ChIP-seq_H3K4me3 Rep1 |
| GSM7844495 |
M82 ChIP-seq_H3K9ac Rep1 |
| GSM7844496 |
M82 ChIP-seq_H3K14ac Rep1 |
| GSM7844497 |
M82 ChIP-seq_H3K18ac Rep1 |
| GSM7844498 |
M82 ChIP-seq_H3K23me3 Rep1 |
| GSM7844499 |
M82 ChIP-seq_H3K27ac Rep1 |
| GSM7844500 |
M82 ChIP-seq_H3K36ac Rep1 |
| GSM7844501 |
M82 ChIP-seq_H3K36me3 Rep1 |
| GSM7844502 |
M82 ChIP-seq_H3K56ac Rep1 |
| GSM7844503 |
M82 ChIP-seq_H3K79ac Rep1 |
| GSM7844504 |
M82 ChIP-seq_H4K5ac Rep1 |
| GSM7844505 |
M82 ChIP-seq_H4K8ac Rep1 |
| GSM7844506 |
M82 ChIP-seq_H4K12ac Rep1 |
| GSM7844507 |
M82 ChIP-seq_H4K16ac Rep1 |
| GSM7844508 |
M82 ChIP-seq_H4K20ac Rep1 |
| GSM7844509 |
M82 ChIP-seq_H3K27me2 Rep1 |
| GSM7844510 |
M82 ChIP-seq_H3K27me3 Rep1 |
| GSM7844511 |
M82 ChIP-seq_H3K9me2 Rep1 |
| GSM7844512 |
M82 ChIP-seq_H3K14me1 Rep1 |
| GSM7844513 |
M82 ChIP-seq_H3K23me1 Rep1 |
| GSM7844514 |
M82 ChIP-seq_H3K27me1 Rep1 |
| GSM7844515 |
M82 ChIP-seq_H3K56me1 Rep1 |
| GSM7844516 |
M82 ChIP-seq_H3K56me2 Rep1 |
| GSM7844517 |
M82 ChIP-seq_Input Rep1 |
| GSM7844567 |
HiC_M82_rep1 |
| GSM7844568 |
HiC_M82_rep2 |
| GSM7844569 |
HiC_M82_rep3 |
| GSM7844570 |
HiC_Kyp_rep1 |
| GSM7844571 |
HiC_Kyp_rep2 |
| GSM7844572 |
M82 Rep1 |
| GSM7844573 |
M82 Rep2 |
| GSM7844574 |
M82 Rep3 |
| GSM7844575 |
Kyp Rep1 |
| GSM7844576 |
Kyp Rep2 |
| GSM7844577 |
Kyp Rep3 |
| GSM8217933 |
M82 ATACseq Rep1 |
| GSM8217934 |
M82 ATACseq Rep2 |
| GSM8217935 |
Kyp ATACseqRep1 |
| GSM8217936 |
Kyp ATACseq Rep2 |
| GSM8561890 |
M82, H3K9ac, Rep1 |
| GSM8561891 |
M82, H3K9me2, Rep1 |
| GSM8561892 |
Kyp, H3K9ac, Rep1 |
| GSM8561893 |
Kyp, H3K9me2, Rep1 |
| GSM8561894 |
M82, H3K9ac, Rep2 |
| GSM8561895 |
M82, H3K9me2, Rep2 |
| GSM8561896 |
Kyp, H3K9ac, Rep2 |
| GSM8561897 |
Kyp, H3K9me2, Rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE245525 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq] |
| GSE245527 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [Hi-C] |
| GSE245528 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [RNA-seq] |
| GSE264429 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ATAC-Seq] |
| GSE264430 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-Seq] |
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| Relations |
| BioProject |
PRJNA1028665 |
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