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| Status |
Public on May 01, 2024 |
| Title |
Gene expression profile of Duocarmycin SA-treated human AML cell lines in vitro |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Acute myeloid leukemia (AML) is a hematological malignancy that is characterized by the expansion of immature myeloid precursors and poor patient survival outcomes. As such there is a need for the evaluation of potential therapeutic candidates that can be used in combination with current treatment regimens to improve patient outcomes. In this study, we investigated the efficacy of DSA on AML cells in vitro and performed gene expression profile analysis of DSA-treated AML cells to identify genes that are regulated by DSA. Here we report DSA-induced differentially expressed genes and cellular pathways that are associated with the functional changes that are observed in DSA-treated AML cells. Our data provides, for the first time, DSA's unique gene signature and provides a mechanistic rationale for DSA-induced functional effects in AML cells.
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| Overall design |
To determine the gene expression profile of DSA-treated human AML cells, human AML cell lines (Molm 14 and HL-60) were cultured with two different concentrations of DSA for 36 hours. At 36 hours, cells were harvested and RNA was isolated from the cells using Qiagen's RNeasy mini kit. RNA concentration and quality was determined using the nanodrop. Gene sequencing was performed by the Hartwell Center for Biotechnology (St. Jude Children's Research Hospital) and gene expression profiling analysis by the Center for Applied Bioinformatics (St. Jude Children's Research Hospital) and Loma Linda University.
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| Contributor(s) |
Francis-Boyle OL, Yang J, Fang J, Jin H, Chen WA, Boyle KE |
| Citation(s) |
38673926 |
| |
| Submission date |
Oct 12, 2023 |
| Last update date |
May 02, 2024 |
| Contact name |
Hongjian Jin |
| E-mail(s) |
hongjian.jin@STJUDE.ORG
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| Organization name |
St Jude Children's Research Hospital
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| Department |
Center for Applied Bioinformatics
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| Street address |
262 Danny Thomas Place
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| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38015 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA1027284 |
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