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| Status |
Public on Oct 04, 2023 |
| Title |
Joint sequence and chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM144135 |
Understanding the predeterminants of transcription factor regulatory activity |
PENNSYLVANIA STATE UNIVERSITY-UNIV PARK |
Shaun Aengus Mahony |
| R01 GM125722 |
Genome-wide structural organization of proteins within human gene regulatory complexes |
PENNSYLVANIA STATE UNIVERSITY-UNIV PARK |
Shaun Aengus Mahony |
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| |
| Submission date |
Sep 30, 2023 |
| Last update date |
Oct 04, 2023 |
| Contact name |
Shaun Mahony |
| E-mail(s) |
mahony@psu.edu
|
| Phone |
814-865-3008
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| Organization name |
Penn State University
|
| Department |
Biochemistry & Molecular Biology
|
| Lab |
Shaun Mahony
|
| Street address |
404 South Frear Bldg
|
| City |
University Park |
| State/province |
PA |
| ZIP/Postal code |
16802 |
| Country |
USA |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL30172 |
NextSeq 2000 (Mus musculus) |
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| Samples (57)
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| GSM7815543 |
iFoxG1, mES+0hrs, RNA-seq, rep1 |
| GSM7815544 |
iFoxL2, mES+0hrs, RNA-seq, rep1 |
| GSM7815545 |
iFoxP3, mES+0hrs, RNA-seq, rep1 |
| GSM7815546 |
iFoxA1, mES+24hrs, RNA-seq, rep1 |
| GSM7815547 |
iFoxA1, mES+24hrs, RNA-seq, rep2 |
| GSM7815548 |
iFoxC1, mES+24hrs, RNA-seq, rep1 |
| GSM7815549 |
iFoxG1, mES+24hrs, RNA-seq, rep1 |
| GSM7815550 |
iFoxL2, mES+24hrs, RNA-seq, rep1 |
| GSM7815551 |
iFoxP3, mES+24hrs, RNA-seq, rep1 |
| GSM7815552 |
iFoxA1, mES+24hrs, RNA-seq, rep3 |
| GSM7815553 |
iFoxC1, mES+24hrs, RNA-seq, rep2 |
| GSM7815554 |
iFoxG1, mES+24hrs, RNA-seq, rep2 |
| GSM7815555 |
iFoxL2, mES+24hrs, RNA-seq, rep2 |
| GSM7815556 |
iFoxP3, mES+24hrs, RNA-seq, rep2 |
| GSM7815557 |
EmptyControl, mES+24hrs, ATAC-seq, rep1 |
| GSM7815558 |
EmptyControl, mES+24hrs, ATAC-seq, rep2 |
| GSM7815559 |
iFoxA1, mES+24hrs, ATAC-seq, rep1 |
| GSM7815560 |
iFoxA1, mES+24hrs, ATAC-seq, rep2 |
| GSM7815561 |
iFoxC1, mES+24hrs, ATAC-seq, rep1 |
| GSM7815562 |
iFoxC1, mES+24hrs, ATAC-seq, rep2 |
| GSM7815563 |
iFoxG1, mES+24hrs, ATAC-seq, rep1 |
| GSM7815564 |
iFoxG1, mES+24hrs, ATAC-seq, rep2 |
| GSM7815565 |
iFoxL2, mES+24hrs, ATAC-seq, rep1 |
| GSM7815566 |
iFoxL2, mES+24hrs, ATAC-seq, rep2 |
| GSM7815567 |
iFoxP3, mES+24hrs, ATAC-seq, rep1 |
| GSM7815568 |
iFoxP3, mES+24hrs, ATAC-seq, rep2 |
| GSM7815569 |
iFoxA1, mES+24hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815570 |
iFoxA1, mES+24hrs, antiFoxA1-ChIP-exo, rep2 |
| GSM7815571 |
iFoxA1, mES+24hrs, antiFLAG-ChIP-exo, rep3 |
| GSM7815572 |
iFoxC1, mES+24hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815573 |
iFoxC1, mES+24hrs, antiFLAG-ChIP-exo, rep2 |
| GSM7815574 |
iFoxG1, mES+24hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815575 |
iFoxG1, mES+24hrs, antiFLAG-ChIP-exo, rep2 |
| GSM7815576 |
iFoxL2, mES+24hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815577 |
iFoxL2, mES+24hrs, antiFLAG-ChIP-exo, rep2 |
| GSM7815578 |
iFoxP3, mES+24hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815579 |
iFoxP3, mES+24hrs, antiFLAG-ChIP-exo, rep2 |
| GSM7815580 |
EmptyControl, mES+0hrs, antiFLAG-ChIP-exo, rep1 |
| GSM7815581 |
EmptyControl, mES+0hrs, antiFoxA1-ChIP-exo, rep2 |
| GSM7815582 |
iAscl1, mES+0hrs, antiAscl1-ChIP-exo, time-titration, rep1 |
| GSM7815583 |
iAscl1, mES+6hrs, antiAscl1-ChIP-exo, time-titration, rep1 |
| GSM7815584 |
iAscl1, mES+12hrs, antiAscl1-ChIP-exo, time-titration, rep1 |
| GSM7815585 |
iAscl1, mES+24hrs, antiAscl1-ChIP-exo, time-titration, rep1 |
| GSM7815586 |
iAscl1, mES+48hrs, antiAscl1-ChIP-exo, time-titration, rep1 |
| GSM7815587 |
iFoxA1, mES+0hrs, antiFLAG-ChIP-exo, time-titration, rep1 |
| GSM7815588 |
iFoxA1, mES+0hrs, antiFoxA1-ChIP-exo, time-titration, rep1 |
| GSM7815589 |
iFoxA1, mES+6hrs, antiFLAG-ChIP-exo, time-titration, rep1 |
| GSM7815590 |
iFoxA1, mES+6hrs, antiFoxA1-ChIP-exo, time-titration, rep1 |
| GSM7815591 |
iFoxA1, mES+12hrs, antiFLAG-ChIP-exo, time-titration, rep1 |
| GSM7815592 |
iFoxA1, mES+12hrs, antiFoxA1-ChIP-exo, time-titration, rep1 |
| GSM7815593 |
iFoxA1, mES+24hrs, antiFLAG-ChIP-exo, time-titration, rep1 |
| GSM7815594 |
iFoxA1, mES+24hrs, antiFoxA1-ChIP-exo, time-titration, rep1 |
| GSM7815595 |
iFoxA1, mES+48hrs, antiFLAG-ChIP-exo, time-titration, rep1 |
| GSM7815596 |
iFoxA1, mES+48hrs, antiFoxA1-ChIP-exo, time-titration, rep1 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE244408 |
Joint sequence and chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin (RNA-seq) |
| GSE244409 |
Joint sequence and chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin (ATAC-seq) |
| GSE244410 |
Joint sequence and chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin (ChIP-exo) |
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| Relations |
| BioProject |
PRJNA1022802 |
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