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Series GSE243201 Query DataSets for GSE243201
Status Public on Apr 15, 2024
Title Maintenance of beta cell function in adolescent T1D subjects treated with a single dose of polyclonal expanded Treg is linked to lower ex vivo Treg expansion
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Adoptive transfer of CD4+CD25hiCD127low FOXP3+ regulatory T cells (Treg) improves outcome as an adjunct treatment in transplantation to maintain tolerance. Phase I clinical trials have shown safety in adults, however, adoptive Treg tolerance is poorly understood in autoimmunity. Here, we explore factors contributing to efficacy in an autologous polyclonal expanded Treg (expTregs) Phase 2 clinical trial in 107 adolescents with recent-onset T1D (Sanford/Lisata Therapeutics Trex Phase 2 clinical trial) randomized 1:1:1 high and low treatment to placebo. A single dose of expTreg therapy (1-24x106cells/kg) did not prevent the decline in the residual beta cell function over two years compared to placebo (p=0.39), regardless of age, baseline c-peptide, or dose of expTreg (p=0.27). expTregs were a highly activated, pure, and suppressive Treg population as determined using flow cytometry and bulk RNA-seq prior to adoptive transfer. A transient increase of activated memory Tregs was detectable by flow cytometry and single-cell RNA-seq one week after infusion in the high dose cohort (p=0.003), suggesting effective transfer of expTreg. However, lower in vitro fold expansion and its linked gene signature associated with better outcome regardless of Treg dose. Together, these results suggest that expTregs quantity alone does not alter outcome; instead, expTreg quality, likely influenced by endogenous Treg features, may be important factors contributing to the efficacy of this treatment in preventing T1D progression.
 
Overall design These data contain 10x Gene Expression and Feature Barcode (CITE-seq) data from Bronchial Alveolar Lavage samples from twelve samples taken from eight intubated patients at two timepoints. Each bam file corresponds to a single sample from a single patient at a timepoints (denoted v1 or v2 for time). Four patients were suffering from Acute Respiratory Distress Syndrom (ARDS) at time of first sample (SLK3, SLK7, SLK22, SLK23).
 
Contributor(s) Bender C, Wiedeman A, Hu A, Ylescupidez A, Gitelman S, Sietsema WK, Griffen K, Long SA
Citation(s) 38718135
Submission date Sep 14, 2023
Last update date Jul 15, 2024
Contact name Stephanie Osmond
E-mail(s) sosmond@benaroyaresearch.org
Organization name Benaroya Research Institute
Street address 1201 9th Ave
City Seattle,
State/province WA
ZIP/Postal code 98101
Country USA
 
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (12)
GSM7780646 1_TG02-17-012_Infusion
GSM7780647 2_102-017_3
GSM7780648 3_102-017_5
This SubSeries is part of SuperSeries:
GSE243278 A phase II randomized trial with autologous polyclonal expanded regulatory T cells in children with new-onset type 1 diabetes
Relations
BioProject PRJNA1017390

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243201_P455-1-aggrCountManifest-220228.csv.gz 1.3 Kb (ftp)(http) CSV
GSE243201_P455-1_aggr_filtered_feature_bc_matrix.h5 246.5 Mb (ftp)(http) H5
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Raw data are available in SRA

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