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Series GSE243104 Query DataSets for GSE243104
Status Public on May 22, 2024
Title O-GlcNAcylation controls pro-fibrotic transcriptional regulatory signaling in hepatic stellate cells (HSCs)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Human LX-2 cells were used for TEAD4 ChIP-seq
 
Overall design Human LX-2 cells were cross-linked, chromatin was sonicated and used for TEAD4 ChIP (chromatin immunoprecipitation with Abcam #ab58310 TEAD4 antibody) assay followed by high-throughput sequencing.
 
Contributor(s) Very N, Boulet C, Eeckhoute J, Dubois-Chevalier J
Citation(s) 38830870
Submission date Sep 13, 2023
Last update date Jun 26, 2024
Contact name Jérôme Eeckhoute
E-mail(s) jerome.eeckhoute@inserm.fr
Organization name CNRS
Lab INSERM UMR 1011, Université Lille-Nord de France
Street address Bâtiment J&K, Faculté de Médecine de Lille-Pôle Recherche, Boulevard du Professeur Leclerc
City Lille
ZIP/Postal code 59045
Country France
 
Platforms (1)
GPL29480 DNBSEQ-T7 (Homo sapiens)
Samples (5)
GSM7779390 LX-2_Input_ChIPseq_rep1-2
GSM7779391 LX-2_TEAD4_ChIPseq_rep1
GSM7779392 LX-2_TEAD4_ChIPseq_rep2
This SubSeries is part of SuperSeries:
GSE243107 O-GlcNAcylation controls pro-fibrotic transcriptional regulatory signaling in hepatic stellate cells
Relations
BioProject PRJNA1016371

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243104_TEAD4_rep1_vs_rep3.idr0.01.bfilt.regionPeak.bed.gz 335.1 Kb (ftp)(http) BED
GSE243104_rep.pooled_x_ctl.pooled.fc.signal.bigwig 775.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA

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