 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 05, 2023 |
| Title |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Other
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
38778058 |
| |
| Submission date |
Sep 05, 2023 |
| Last update date |
Jun 05, 2024 |
| Contact name |
Lu Bai |
| E-mail(s) |
lub15@psu.edu
|
| Organization name |
Penn State University
|
| Department |
BMB
|
| Lab |
Bai
|
| Street address |
406 SOUTH FREAR, UNIVERSITY PARK
|
| City |
UNIVERSITY PARK |
| State/province |
PENNSYLVANIA |
| ZIP/Postal code |
16802 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL31112 |
NextSeq 2000 (Saccharomyces cerevisiae) |
|
| Samples (82)
|
| GSM7762053 |
MATalpha, 4C, rep2 |
| GSM7762054 |
YBP2, 4C, rep1 |
| GSM7762055 |
YBP2, 4C, rep2 |
| GSM7762056 |
Met4, -met, ChIP, rep1 |
| GSM7762057 |
Met4, -met, ChIP, rep2 |
| GSM7762058 |
HiC, -met, rep1 |
| GSM7762059 |
HiC, -met, rep2 |
| GSM7762063 |
Ctrl, MeDIP, 1hr, 0X, rep1 |
| GSM7762064 |
Ctrl, MeDIP, 1hr, 0X, rep2 |
| GSM7762065 |
YBP2, MeDIP, 1hr, 4X, rep1 |
| GSM7762066 |
YBP2, MeDIP, 1hr, 4X, rep2 |
| GSM7762067 |
YBP2, MeDIP, 1hr, 8X, rep1 |
| GSM7762068 |
YBP2, MeDIP, 1hr, 8X, rep2 |
| GSM7762069 |
YBP2, MeDIP, 1hr, 16X, rep1 |
| GSM7762070 |
YBP2, MeDIP, 1hr, 16X, rep2 |
| GSM7762071 |
YBP2, MeDIP, 1hr, 256X, rep1 |
| GSM7762072 |
YBP2, MeDIP, 1hr, 256X, rep2 |
| GSM7762073 |
Ctrl, MeDIP, 2hr, 0X, rep1 |
| GSM7762074 |
Ctrl, MeDIP, 2hr, 0X, rep2 |
| GSM7762075 |
YBP2, MeDIP, 2hr, 256X, rep1 |
| GSM7762076 |
YBP2, MeDIP, 2hr, 256X, rep2 |
| GSM7762077 |
PUS2, MeDIP, 2hr, 256X, rep1 |
| GSM7762078 |
PUS2, MeDIP, 2hr, 256X, rep2 |
| GSM7762079 |
OLE1, MeDIP, 2hr, 256X, rep1 |
| GSM7762080 |
OLE1, MeDIP, 2hr, 256X, rep2 |
| GSM7762081 |
CDC43, MeDIP, 2hr, 256X, rep1 |
| GSM7762082 |
CDC43, MeDIP, 2hr, 256X, rep2 |
| GSM7762083 |
PCL10, MeDIP, 2hr, 256X, rep1 |
| GSM7762084 |
PCL10, MeDIP, 2hr, 256X, rep2 |
| GSM7762085 |
SHC1, MeDIP, 2hr, 256X, rep1 |
| GSM7762086 |
SHC1, MeDIP, 2hr, 256X, rep2 |
| GSM7762087 |
LSM4, MeDIP, 2hr, 256X, rep1 |
| GSM7762088 |
LSM4, MeDIP, 2hr, 256X, rep2 |
| GSM7762089 |
VHR1, MeDIP, 2hr, 256X, rep1 |
| GSM7762090 |
VHR1, MeDIP, 2hr, 256X, rep2 |
| GSM7762091 |
MBR1, MeDIP, 2hr, 256X, rep1 |
| GSM7762092 |
MBR1, MeDIP, 2hr, 256X, rep2 |
| GSM7762093 |
MNR2, MeDIP, 2hr, 256X, rep1 |
| GSM7762094 |
MNR2, MeDIP, 2hr, 256X, rep2 |
| GSM7762095 |
LHS1, MeDIP, 2hr, 256X, rep1 |
| GSM7762096 |
LHS1, MeDIP, 2hr, 256X, rep2 |
| GSM7762097 |
TRP2, -met, MeDIP, 2hr, 256X, rep1 |
| GSM7762098 |
TRP2, -met, MeDIP, 2hr, 256X, rep2 |
| GSM7762099 |
Ctrl, -met, MeDIP, 2hr, 0X, rep1 |
| GSM7762100 |
Ctrl, -met, MeDIP, 2hr, 0X, rep2 |
| GSM7762101 |
TRP2, +met, MeDIP, 2hr, 256X, rep1 |
| GSM7762102 |
TRP2, +met, MeDIP, 2hr, 256X, rep2 |
| GSM7762103 |
Ctrl, +met, MeDIP, 2hr, 0X, rep1 |
| GSM7762104 |
Ctrl, +met, MeDIP, 2hr, 0X, rep2 |
| GSM7762105 |
MATa, D, MeDIP, 2hr, 256X, rep1 |
| GSM7762106 |
MATa, D, MeDIP, 2hr, 256X, rep2 |
| GSM7762107 |
Ctrl_a, D, MeDIP, 2hr, 0X, rep1 |
| GSM7762108 |
Ctrl_a, D, MeDIP, 2hr, 0X, rep2 |
| GSM7762109 |
MATa, G, MeDIP, 2hr, 256X, rep1 |
| GSM7762110 |
MATa, G, MeDIP, 2hr, 256X, rep2 |
| GSM7762111 |
Ctrl_a, G, MeDIP, 2hr, 0X, rep1 |
| GSM7762112 |
Ctrl_a, G, MeDIP, 2hr, 0X, rep2 |
| GSM7762113 |
MATalpha, D, MeDIP, 2hr, 256X, rep1 |
| GSM7762114 |
MATalpha, D, MeDIP, 2hr, 256X, rep2 |
| GSM7762115 |
Ctrl_alpha, D, MeDIP, 2hr, 0X, rep1 |
| GSM7762116 |
Ctrl_alpha, D, MeDIP, 2hr, 0X, rep2 |
| GSM7762117 |
MATalpha, G, MeDIP, 2hr, 256X, rep1 |
| GSM7762118 |
MATalpha, G, MeDIP, 2hr, 256X, rep2 |
| GSM7762119 |
Ctrl_alpha, G, MeDIP, 2hr, 0X, rep1 |
| GSM7762120 |
Ctrl_alpha, G, MeDIP, 2hr, 0X, rep2 |
| GSM7762121 |
Mlp1_M.CviPI, MeDIP, rep1 |
| GSM7762122 |
Mlp1_M.CviPI, MeDIP, rep2 |
| GSM7762123 |
M.CviPI, MeDIP, rep1 |
| GSM7762124 |
M.CviPI, MeDIP, rep2 |
| GSM7762125 |
RNA-seq, -met, rep1 |
| GSM7762126 |
RNA-seq, -met, rep2 |
| GSM8016819 |
HiC, Ctrl, -E2, rep1 |
| GSM8016820 |
HiC, Ctrl, +E2, rep1 |
| GSM8016821 |
HiC, YBP2, -E2, rep1 |
| GSM8016822 |
HiC, YBP2, +E2, rep1 |
| GSM8016823 |
Ctrl, MLP1/2 mutant, MeDIP, 2hr, 0X, rep1 |
| GSM8016824 |
Ctrl, MLP1/2 mutant, MeDIP, 2hr, 0X, rep2 |
| GSM8016825 |
YBP2, MLP1/2 mutant, MeDIP, 2hr, 256X, rep1 |
| GSM8016826 |
YBP2, MLP1/2 mutant, MeDIP, 2hr, 256X, rep2 |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE242394 |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (4C) |
| GSE242395 |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (ChIP) |
| GSE242396 |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (HiC) |
| GSE242398 |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (MeDIP) |
| GSE242399 |
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (RNA) |
|
| Relations |
| BioProject |
PRJNA1013317 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE242400_RAW.tar |
628.9 Mb |
(http)(custom) |
TAR (of BED, BIGWIG, COOL, MATRIX, TXT) |
SRA Run Selector |
|
|
|
|
 |
Less...
More...