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Series GSE242108 Query DataSets for GSE242108
Status Public on Sep 05, 2023
Title Modeling Radiation-induced Cardiovascular Dysfunction with Human iPSC-Derived Engineered Heart Tissues
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Low-LET radiation can cause cardiovascular dysfunctions at high-dose rates. For example, photons used in thoracic radiotherapy are known to cause acute cardiac tissue damage with elevated serum cardiac Troponin I level and long-term cardiac complications when delivered as fractionated exposures at high-dose rates. However, the effects of continuous low-dose rate radiation exposure on the heart, which simulate the space radiation environment, have not been well-studied. In this study, we aim to model low-LET space radiation-induced cardiovascular dysfunction using human induced pluripotent stem cell (iPSC)-derived engineered heart tissues (EHTs) exposed to protracted γ-ray irradiation. The investigation of pathophysiological changes in this model may provide insights and guide the development of countermeasures. As a proof-of-principle for the application of this model in drug development, we also tested the protective effect of a mitochondrial-specific antioxidant, MitoTempo, on irradiated EHTs.
 
Overall design In this study, EHTs were generated from two healthy iPSC lines (#1 and #2) using an established protocol, comprising of 70% cardiomyocytes (CMs), 15% endothelial cells (ECs) and 15% fibroblasts (FBs). After 10 days, the EHTs were exposed to 137Cs γ-rays continuously at a dose-rate of 9.3 mGy/hour for 5 days. Cells were collected for bulk RNA sequecning from two independent experiments.
 
Contributor(s) Cao X, Thomas D, Whitcombb L, Wang M, Chatterjee A, Chicco AJ, Weil MM, Wu JC
Citation(s) 38431383
Submission date Aug 31, 2023
Last update date Apr 04, 2024
Contact name Joseph C. Wu
E-mail(s) joewu@stanford.edu
Organization name Stanford university
Department Stanford Cardiovascular Institute
Lab Joseph Wu lab
Street address 240 Pasteur Dr
City Stanford
State/province California
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (16)
GSM7749114 EHT_Control_line1_rep1 [CD1]
GSM7749115 EHT_Control_line1_rep2 [CD2]
GSM7749116 EHT_Control_line2_rep1 [CD5]
Relations
BioProject PRJNA1011335

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE242108_counts.csv.gz 663.9 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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