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Series GSE241773 Query DataSets for GSE241773
Status Public on Jan 26, 2025
Title ACSS2 mediates an epigenetic pathway to regulate maternal β-cell adaptation and progression of gestational diabetes (ATAC-seq and CUT&RUN)
Organism Mus musculus
Experiment type Non-coding RNA profiling by array
Summary Maternal pancreatic β-cell state is adapted to accommodate gestation metabolism. Defects in this process may cause gestational diabetes mellitus (GDM), with risk factors including a high-calorie diet during pregnancy. However, the regulatory mechanism of maternal β-cell adaptation is largely unknown. Using single-cell transcriptome combining genetic analyses, we discovered a precise process of β-cell adaptation in mice which is associated with progression of metabolic stress-related β-cell dysfunction, increased acetyl-CoA biosynthesis, and gene element-specific histone acetylation. STAT3 recruits p300 to promote histone acetylation levels of pregnancy-associated genes, and Acetyl-CoA Synthetase 2 (ACSS2) enhances this process. High-fat feeding causes hyperacetylation of chromatin that is specifically opened during pregnancy, which results in overexpression of genes that impair β-cell functions and, consequently, hyperglycemia. However, these impairments can be rescued by β-cell-specific deletion of Acss2. Therefore, our study reveals a precise adaptation process in β-cells at the single-cell level during pregnancy and a specific epigenetic pathway that regulates this process. We also explain the epigenetic regulatory mechanism by which a high-fat diet can lead to GDM and identify ACSS2 as a potential molecular target for controlling the progression of GDM.
 
Overall design ChIP-seq and ATAC-seq of mouse pancreatic islets during gestation and puerperium days.
 
Contributor(s) Xu C, Zhang Y, He S, Wang X, Wang X, He M, Yu X
Citation(s) 40393969
Submission date Aug 28, 2023
Last update date May 21, 2025
Contact name Cheng-ran Xu
Organization name Peking University
Department School of Basic Medical Sciences
Street address NO.5 YIHEYUAN ROAD HAIDIAN DISTRICT, BEIJING, P.R.CHINA
City Beijing
State/province -
ZIP/Postal code 100871
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (69)
GSM7743327 pancreatic β cell, G0, ATAC-seq, biol rep1
GSM7743328 pancreatic β cell, G0, ATAC-seq, biol rep2
GSM7743329 pancreatic β cell, G14.5, ATAC-seq, biol rep1
This SubSeries is part of SuperSeries:
GSE241776 ACSS2 mediates an epigenetic pathway to regulate maternal Beta-cell adaptation and progression of gestational diabetes
Relations
BioProject PRJNA1009853

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241773_G0_ATAC_rep1.bedgraph.gz 73.6 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_ATAC_rep2.bedgraph.gz 57.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K27ac.bed.gz 294.1 Kb (ftp)(http) BED
GSE241773_G0_H3K27ac_rep1.bedgraph.gz 164.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K27ac_rep2.bedgraph.gz 168.1 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K27me3_rep1.bedgraph.gz 499.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K27me3_rep2.bedgraph.gz 492.9 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K4me1.bed.gz 458.0 Kb (ftp)(http) BED
GSE241773_G0_H3K4me1_rep1.bedgraph.gz 100.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_H3K4me1_rep2.bedgraph.gz 67.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3.bed.gz 69.8 Kb (ftp)(http) BED
GSE241773_G0_STAT3_rep1.bedgraph.gz 32.6 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3_rep1.nor.bedgraph.gz 32.6 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3_rep2.bedgraph.gz 20.0 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3_rep2.nor.bedgraph.gz 20.0 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3_rep3.bedgraph.gz 18.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_STAT3_rep3.nor.bedgraph.gz 18.1 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_p300.bed.gz 127.3 Kb (ftp)(http) BED
GSE241773_G0_p300_rep1.bedgraph.gz 28.0 Mb (ftp)(http) BEDGRAPH
GSE241773_G0_p300_rep2.bedgraph.gz 46.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_ATAC_rep1.bedgraph.gz 75.2 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_ATAC_rep2.bedgraph.gz 75.8 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K27ac_rep1.bedgraph.gz 110.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K27ac_rep2.bedgraph.gz 179.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K27me3_rep1.bedgraph.gz 264.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K27me3_rep2.bedgraph.gz 348.7 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K4me1.bed.gz 490.0 Kb (ftp)(http) BED
GSE241773_G14.5_H3K4me1_rep1.bedgraph.gz 55.2 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3K4me1_rep2.bedgraph.gz 118.5 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_H3k27ac.bed.gz 282.0 Kb (ftp)(http) BED
GSE241773_G14.5_STAT3.bed.gz 48.3 Kb (ftp)(http) BED
GSE241773_G14.5_STAT3_rep1.bedgraph.gz 54.6 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_STAT3_rep1.nor.bedgraph.gz 55.2 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_STAT3_rep2.bedgraph.gz 23.5 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_STAT3_rep2.nor.bedgraph.gz 23.5 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_STAT3_rep3.bedgraph.gz 59.3 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_STAT3_rep3.nor.bedgraph.gz 59.7 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_p300.bed.gz 179.8 Kb (ftp)(http) BED
GSE241773_G14.5_p300_rep1.bedgraph.gz 22.8 Mb (ftp)(http) BEDGRAPH
GSE241773_G14.5_p300_rep2.bedgraph.gz 33.1 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2KO_H3K27ac.bed.gz 235.1 Kb (ftp)(http) BED
GSE241773_G18.5Acss2KO_H3K27ac_rep1.bedgraph.gz 14.9 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2KO_H3K27ac_rep2.bedgraph.gz 14.1 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2KO_H3K27ac_rep3.bedgraph.gz 21.9 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2WT_H3K27ac.bed.gz 297.5 Kb (ftp)(http) BED
GSE241773_G18.5Acss2WT_H3K27ac_rep1.bedgraph.gz 34.8 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2WT_H3K27ac_rep2.bedgraph.gz 38.7 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Acss2WT_H3K27ac_rep3.bedgraph.gz 12.7 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3KO_H3K27ac.bed.gz 205.5 Kb (ftp)(http) BED
GSE241773_G18.5Stat3KO_H3K27ac_rep1.bedgraph.gz 15.2 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3KO_H3K27ac_rep2.bedgraph.gz 13.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3KO_H3K27ac_rep3.bedgraph.gz 15.5 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3WT_H3K27ac.bed.gz 246.7 Kb (ftp)(http) BED
GSE241773_G18.5Stat3WT_H3K27ac_rep1.bedgraph.gz 22.4 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3WT_H3K27ac_rep2.bedgraph.gz 36.8 Mb (ftp)(http) BEDGRAPH
GSE241773_G18.5Stat3WT_H3K27ac_rep3.bedgraph.gz 33.4 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_ATAC.bed.gz 255.6 Kb (ftp)(http) BED
GSE241773_HFDG0_ATAC_rep1.bedgraph.gz 31.0 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_ATAC_rep2.bedgraph.gz 40.0 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_H3K27ac.bed.gz 179.5 Kb (ftp)(http) BED
GSE241773_HFDG0_H3K27ac_rep1.bedgraph.gz 35.3 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_H3K27ac_rep1.nor.bedgraph.gz 35.2 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_H3K27ac_rep2.bedgraph.gz 17.9 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG0_H3K27ac_rep2.nor.bedgraph.gz 17.8 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5Acss2KO_H3K27ac.bed.gz 132.8 Kb (ftp)(http) BED
GSE241773_HFDG14.5KO_H3K27ac_rep1.bedgraph.gz 11.0 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5KO_H3K27ac_rep1.nor.bedgraph.gz 11.0 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5KO_H3K27ac_rep2.bedgraph.gz 12.5 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5KO_H3K27ac_rep2.nor.bedgraph.gz 12.5 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5WT_H3K27ac.bed.gz 168.3 Kb (ftp)(http) BED
GSE241773_HFDG14.5WT_H3K27ac_rep1.bedgraph.gz 13.1 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5WT_H3K27ac_rep1.nor.bedgraph.gz 13.1 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5WT_H3K27ac_rep2.bedgraph.gz 16.9 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5WT_H3K27ac_rep2.nor.bedgraph.gz 16.9 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5_ATAC.bed.gz 505.5 Kb (ftp)(http) BED
GSE241773_HFDG14.5_ATAC_rep1.bedgraph.gz 82.2 Mb (ftp)(http) BEDGRAPH
GSE241773_HFDG14.5_ATAC_rep2.bedgraph.gz 77.2 Mb (ftp)(http) BEDGRAPH
GSE241773_MS_H3K27ac_rep1.bedgraph.gz 96.6 Mb (ftp)(http) BEDGRAPH
GSE241773_MS_H3K27ac_rep2.bedgraph.gz 81.1 Mb (ftp)(http) BEDGRAPH
GSE241773_NS_H3K27ac_rep1.bedgraph.gz 97.3 Mb (ftp)(http) BEDGRAPH
GSE241773_NS_H3K27ac_rep2.bedgraph.gz 112.8 Mb (ftp)(http) BEDGRAPH
GSE241773_NS_ProlactinCtrl_H3K27ac.bed.gz 88.5 Kb (ftp)(http) BED
GSE241773_NS_ProlactinCtrl_H3K27ac.bedgraph.gz 43.8 Mb (ftp)(http) BEDGRAPH
GSE241773_NS_Prolactin_H3K27ac.bed.gz 161.2 Kb (ftp)(http) BED
GSE241773_NS_Prolactin_H3K27ac.bedgraph.gz 56.5 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_ATAC.bed.gz 312.4 Kb (ftp)(http) BED
GSE241773_P7NL_ATAC_rep1.bedgraph.gz 42.8 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_ATAC_rep2.bedgraph.gz 57.4 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K27ac.bed.gz 177.6 Kb (ftp)(http) BED
GSE241773_P7NL_H3K27ac_rep1.bedgraph.gz 238.9 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K27ac_rep2.bedgraph.gz 91.5 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K27me3_rep1.bedgraph.gz 246.8 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K27me3_rep2.bedgraph.gz 434.0 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K4me1.bed.gz 313.4 Kb (ftp)(http) BED
GSE241773_P7NL_H3K4me1_rep1.bedgraph.gz 44.1 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_H3K4me1_rep2.bedgraph.gz 51.9 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3.bed.gz 100.1 Kb (ftp)(http) BED
GSE241773_P7NL_STAT3_rep1.bedgraph.gz 23.1 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3_rep1.nor.bedgraph.gz 23.0 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3_rep2.bedgraph.gz 64.3 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3_rep2.nor.bedgraph.gz 64.6 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3_rep3.bedgraph.gz 21.4 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_STAT3_rep3.nor.bedgraph.gz 21.3 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_p300.bed.gz 234.9 Kb (ftp)(http) BED
GSE241773_P7NL_p300_rep1.bedgraph.gz 52.7 Mb (ftp)(http) BEDGRAPH
GSE241773_P7NL_p300_rep2.bedgraph.gz 82.2 Mb (ftp)(http) BEDGRAPH
GSE241773_SDG0_ATAC.bed.gz 321.6 Kb (ftp)(http) BED
GSE241773_SDG14.5_ATAC.bed.gz 420.5 Kb (ftp)(http) BED
GSE241773_SDG14.5_H3K27ac.bed.gz 241.5 Kb (ftp)(http) BED
GSE241773_SDG14.5_H3K27ac_rep1.bedgraph.gz 48.5 Mb (ftp)(http) BEDGRAPH
GSE241773_SDG14.5_H3K27ac_rep1.nor.bedgraph.gz 48.5 Mb (ftp)(http) BEDGRAPH
GSE241773_SDG14.5_H3K27ac_rep2.bedgraph.gz 13.9 Mb (ftp)(http) BEDGRAPH
GSE241773_SDG14.5_H3K27ac_rep2.nor.bedgraph.gz 13.9 Mb (ftp)(http) BEDGRAPH
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