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GEO accession:
Series GSE241741
Query DataSets for GSE241741
Status
Public on Jan 22, 2025
Title
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus
Organism
Mus musculus
Experiment type
Other
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Aug 25, 2023
Last update date
Jan 23, 2025
Contact name
Xiang Qiu
E-mail(s)
xiangqiupku@gmail.com
Phone
4105588630
Organization name
National Institutes of Health
Street address
251 Bayview Blvd.
City
Baltimore
ZIP/Postal code
21224
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (96)
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More...
GSM7732848
Capture Hi-C EF1a For #1 rep1
GSM7732849
Capture Hi-C EF1a For #1 rep2
GSM7732850
Capture Hi-C EF1a Rev #1 rep1
GSM7732851
Capture Hi-C EF1a Rev #1 rep2
GSM7732852
Capture Hi-C EF1a Rev #2 rep1
GSM7732853
Capture Hi-C EF1a Rev #2 rep2
GSM7732854
Capture Hi-C EF1a For #2 rep1
GSM7732855
Capture Hi-C EF1a For #2 rep2
GSM7732856
Capture Hi-C Eu-- #2 rep1
GSM7732857
Capture Hi-C Eu-- #2 rep2
GSM7732858
Capture Hi-C Eu-- #1 rep1
GSM7732859
Capture Hi-C Eu-- #1 rep2
GSM7732860
Capture Hi-C WT rep1
GSM7732861
Capture Hi-C WT rep2
GSM7733041
Directional RNA-Seq Eu-- #2 rep1
GSM7733042
Directional RNA-Seq Eu-- #2 rep2
GSM7733043
Directional RNA-Seq Eu-- #1 rep1
GSM7733044
Directional RNA-Seq Eu-- #1 rep2
GSM7733045
Directional RNA-Seq EF1a Rev #2 rep1
GSM7733046
Directional RNA-Seq EF1a Rev #2 rep2
GSM7733047
Directional RNA-Seq EF1a For #2 rep1
GSM7733048
Directional RNA-Seq EF1a For #2 rep2
GSM7733049
Directional RNA-Seq EF1a For #1 rep1
GSM7733050
Directional RNA-Seq EF1a For #1 rep2
GSM7733051
Directional RNA-Seq EF1a Rev #1 rep1
GSM7733052
Directional RNA-Seq EF1a Rev #1 rep2
GSM7733053
Directional RNA-Seq WT rep2
GSM7733054
Directional RNA-Seq 3'CBEs-- rep1
GSM7733055
Directional RNA-Seq 3'CBEs-- rep2
GSM7733056
Directional RNA-Seq WT rep1
GSM7733057
Directional RNA-Seq 3'CBEs Inv #1 rep1
GSM7733058
Directional RNA-Seq 3'CBEs Inv #1 rep2
GSM7733059
Directional RNA-Seq 3'CBEs Inv #2 rep1
GSM7733060
Directional RNA-Seq 3'CBEs Inv #2 rep2
GSM7733061
CTCF ChIP-Seq WT rep1
GSM7733062
Rad21 ChIP-Seq WT rep1
GSM7733063
CTCF ChIP-Seq WT rep2
GSM7733064
Rad21 ChIP-Seq WT rep2
GSM7733065
Rad21 ChIP-Seq EF1a Rev #2 rep1
GSM7733066
Rad21 ChIP-Seq EF1a Rev #2 rep2
GSM7733067
CTCF ChIP-Seq EF1a Rev #1 rep1
GSM7733068
CTCF ChIP-Seq EF1a Rev #1 rep2
GSM7733069
H3K4me3 ChIP-Seq EF1a Rev #1 rep1
GSM7733070
H3K4me3 ChIP-Seq EF1a Rev #1 rep2
GSM7733071
H3K27ac ChIP-Seq EF1a Rev #1 rep1
GSM7733072
H3K27ac ChIP-Seq EF1a Rev #1 rep2
GSM7733073
Rad21 ChIP-Seq EF1a Rev #1 rep1
GSM7733074
Rad21ChIP-Seq EF1a Rev #1 rep2
GSM7733075
CTCF ChIP-Seq EF1a Rev #2 rep1
GSM7733076
CTCF ChIP-Seq EF1a Rev #2 rep2
GSM7733077
H3K4me3 ChIP-Seq EF1a Rev #2 rep1
GSM7733078
H3K4me3 ChIP-Seq EF1a Rev #2 rep2
GSM7733079
H3K27ac ChIP-Seq EF1a Rev #2 rep1
GSM7733080
H3K27ac ChIP-Seq EF1a Rev #2 rep2
GSM7733081
CTCF ChIP-Seq EF1a For #2 rep1
GSM7733082
CTCF ChIP-Seq EF1a For #2 rep2
GSM7733083
H3K4me3 ChIP-Seq EF1a For #2 rep1
GSM7733084
H3K4me3 ChIP-Seq EF1a For #2 rep2
GSM7733085
H3K27ac ChIP-Seq EF1a For #2 rep1
GSM7733086
Rad21 ChIP-Seq EF1a For #2 rep1
GSM7733087
H3K27ac ChIP-Seq EF1a For #2 rep2
GSM7733088
Rad21 ChIP-Seq EF1a For #2 rep2
GSM7733089
CTCF ChIP-Seq EF1a For #1 rep1
GSM7733090
CTCF ChIP-Seq EF1a For #1 rep2
GSM7733091
H3K4me3 ChIP-Seq EF1a For #1 rep1
GSM7733092
H3K4me3 ChIP-Seq EF1a For #1 rep2
GSM7733093
H3K27ac ChIP-Seq EF1a For #1 rep1
GSM7733094
H3K27ac ChIP-Seq EF1a For #1 rep2
GSM7733095
Rad21 ChIP-Seq EF1a For #1 rep1
GSM7733096
Rad21 ChIP-Seq EF1a For #1 rep2
GSM7733097
Rad21 ChIP-Seq Eu-- rep2
GSM7733098
CTCF ChIP-Seq Eu-- rep1
GSM7733099
CTCF ChIP-Seq Eu-- rep2
GSM7733100
H3K4me3 ChIP-Seq Eu-- rep1
GSM7733101
H3K4me3 ChIP-Seq Eu-- rep2
GSM7733102
H3K27ac ChIP-Seq Eu-- rep1
GSM7733103
H3K27ac ChIP-Seq Eu-- rep2
GSM7733104
Rad21 ChIP-Seq Eu-- rep1
GSM7733105
H3K4me3 ChIP-Seq WT rep1
GSM7733106
H3K4me3 ChIP-Seq WT rep2
GSM7733107
H3K27ac ChIP-Seq WT rep1
GSM7733108
H3K27ac ChIP-Seq WT rep2
GSM7734673
CTCF Hi-ChIP 3'CBEs Inv #1 rep1
GSM7734674
CTCF Hi-ChIP 3'CBEs Inv #1 rep2
GSM7734675
CTCF Hi-ChIP IGCR1-- rep1
GSM7734676
CTCF Hi-ChIP IGCR1-- rep2
GSM7734677
Rad21 Hi-ChIP IGCR1-- rep1
GSM7734678
Rad21 Hi-ChIP IGCR1-- rep2
GSM7734679
CTCF Hi-ChIP 3'CBEs Inv #2 rep1
GSM7734680
CTCF Hi-ChIP 3'CBEs Inv #2 rep2
GSM7734681
CTCF Hi-ChIP WT rep1
GSM7734682
CTCF Hi-ChIP WT rep2
GSM7734683
Rad21 Hi-ChIP WT rep1
GSM7734684
Rad21 Hi-ChIP WT rep2
GSM7734685
CTCF Hi-ChIP 3'CBEs-- rep1
GSM7734686
CTCF Hi-ChIP 3'CBEs-- rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE241661
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [Capture Hi-C]
GSE241667
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [Directional RNA-Seq]
GSE241668
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [ChIP-Seq]
GSE241740
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [HiChIP]
Relations
BioProject
PRJNA1009442
Download family
Format
SOFT formatted family file(s)
SOFT
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TXT
Supplementary file
Size
Download
File type/resource
GSE241741_RAW.tar
19.6 Gb
(http)
(custom)
TAR (of BW, HIC)
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