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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jul 24, 2024 |
| Title |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates leukemogenesis |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| Web link |
http://10.1038/s41586-024-07969-x
|
| |
|
| Contributor(s) |
Zou Z, Dou X, He C |
| Citation(s) |
39358506 |
| |
| Submission date |
Aug 21, 2023 |
| Last update date |
Oct 25, 2024 |
| Contact name |
Xiaoyang Dou |
| E-mail(s) |
xiaoyang.dou@sibcb.ac.cn
|
| Organization name |
Center for Excellence in Molecular Cell Science, CAS
|
| Street address |
320 Yue Yang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (291)
|
| GSM7720791 |
mESC, Tet2 KO, ATAC, rep2 |
| GSM7720792 |
mESC, Pspc1 WT, ATAC, rep1 |
| GSM7720793 |
mESC, Pspc1 WT, ATAC, rep2 |
| GSM7720794 |
mESC, Pspc1 KO, ATAC, rep1 |
| GSM7720795 |
mESC, Pspc1 KO, ATAC, rep2 |
| GSM7720796 |
mLK, Tet2 WT, ATAC, rep1 |
| GSM7720797 |
mLK, Tet2 WT, ATAC, rep2 |
| GSM7720798 |
mLK, Tet2 KO, ATAC, rep1 |
| GSM7720799 |
mLK, Tet2 KO, ATAC, rep2 |
| GSM7720826 |
mESC, Tet2 WT, H2AK119ub, CUT&Tag, rep1 |
| GSM7720827 |
mESC, Tet2 WT, H2AK119ub, CUT&Tag, rep2 |
| GSM7720828 |
mESC, Tet2 KO, H2AK119ub, CUT&Tag, rep1 |
| GSM7720829 |
mESC, Tet2 KO, H2AK119ub, CUT&Tag, rep2 |
| GSM7720830 |
mESC, Tet2 WT, H3K27me3, CUT&Tag, rep1 |
| GSM7720831 |
mESC, Tet2 WT, H3K27me3, CUT&Tag, rep2 |
| GSM7720832 |
mESC, Tet2 KO, H3K27me3, CUT&Tag, rep1 |
| GSM7720833 |
mESC, Tet2 KO, H3K27me3, CUT&Tag, rep2 |
| GSM7720834 |
mLK, Tet2 WT, H2AK119ub, CUT&Tag, rep1 |
| GSM7720835 |
mLK, Tet2 WT, H2AK119ub, CUT&Tag, rep2 |
| GSM7720836 |
mLK, Tet2 KO, H2AK119ub, CUT&Tag, rep1 |
| GSM7720837 |
mLK, Tet2 KO, H2AK119ub, CUT&Tag, rep2 |
| GSM7720838 |
mLK, Tet2 WT, H3K27me3, CUT&Tag, rep1 |
| GSM7720839 |
mLK, Tet2 WT, H3K27me3, CUT&Tag, rep2 |
| GSM7720840 |
mLK, Tet2 KO, H3K27me3, CUT&Tag, rep1 |
| GSM7720841 |
mLK, Tet2 KO, H3K27me3, CUT&Tag, rep2 |
| GSM7720842 |
K562, siControl, H2AK119ub, CUT&Tag, rep1 |
| GSM7720843 |
K562, siControl, H2AK119ub, CUT&Tag, rep2 |
| GSM7720844 |
K562, siMBD6, H2AK119ub, CUT&Tag, rep1 |
| GSM7720845 |
K562, siMBD6, H2AK119ub, CUT&Tag, rep2 |
| GSM7720846 |
K562, TET2 WT, H2AK119ub, CUT&Tag, rep1 |
| GSM7720847 |
K562, TET2 WT, H2AK119ub, CUT&Tag, rep2 |
| GSM7720848 |
K562, TET2 KO, H2AK119ub, CUT&Tag, rep1 |
| GSM7720849 |
K562, TET2 KO, H2AK119ub, CUT&Tag, rep2 |
| GSM7720907 |
mESC, WT, caRNA, Input, rep1 |
| GSM7720908 |
mESC, WT, caRNA, Input, rep2 |
| GSM7720909 |
mESC, WT, caRNA, Input, rep3 |
| GSM7720910 |
mESC, WT, caRNA, m5C-IP, rep1 |
| GSM7720911 |
mESC, WT, caRNA, m5C-IP, rep2 |
| GSM7720912 |
mESC, WT, caRNA, m5C-IP, rep3 |
| GSM7720913 |
K562, WT, caRNA, Input, rep1 |
| GSM7720914 |
K562, WT, caRNA, Input, rep2 |
| GSM7720915 |
K562, WT, caRNA, Input, rep3 |
| GSM7720916 |
K562, WT, caRNA, m5C-IP, rep1 |
| GSM7720917 |
K562, WT, caRNA, m5C-IP, rep2 |
| GSM7720918 |
K562, WT, caRNA, m5C-IP, rep3 |
| GSM7720919 |
mESC, Tet2 WT, nascentRNA, 10m, rep1 |
| GSM7720920 |
mESC, Tet2 WT, nascentRNA, 10m, rep2 |
| GSM7720921 |
mESC, Tet2 WT, nascentRNA, 10m, rep3 |
| GSM7720922 |
mESC, Tet2 WT, nascentRNA, 20m, rep1 |
| GSM7720923 |
mESC, Tet2 WT, nascentRNA, 20m, rep2 |
| GSM7720924 |
mESC, Tet2 WT, nascentRNA, 20m, rep3 |
| GSM7720925 |
mESC, Tet2 WT, nascentRNA, 40m, rep1 |
| GSM7720926 |
mESC, Tet2 WT, nascentRNA, 40m, rep2 |
| GSM7720927 |
mESC, Tet2 WT, nascentRNA, 40m, rep3 |
| GSM7720928 |
mESC, Tet2 KO, nascentRNA, 10m, rep1 |
| GSM7720929 |
mESC, Tet2 KO, nascentRNA, 10m, rep2 |
| GSM7720930 |
mESC, Tet2 KO, nascentRNA, 10m, rep3 |
| GSM7720931 |
mESC, Tet2 KO, nascentRNA, 20m, rep1 |
| GSM7720932 |
mESC, Tet2 KO, nascentRNA, 20m, rep2 |
| GSM7720933 |
mESC, Tet2 KO, nascentRNA, 20m, rep3 |
| GSM7720934 |
mESC, Tet2 KO, nascetnRNA, 40m, rep1 |
| GSM7720935 |
mESC, Tet2 KO, nascentRNA, 40m, rep2 |
| GSM7720936 |
mESC, Tet2 KO, nascentRNA, 40m, rep3 |
| GSM7720937 |
mLK, Tet2 WT, totalRNA, rep1 |
| GSM7720938 |
mLK, Tet2 WT, totalRNA, rep2 |
| GSM7720939 |
mLK, Tet2 WT, totalRNA, rep3 |
| GSM7720940 |
mLK, Tet2 KO, totalRNA, rep1 |
| GSM7720941 |
mLK, Tet2 KO, totalRNA, rep2 |
| GSM7720942 |
mLK, Tet2 KO, totalRNA, rep3 |
| GSM7720943 |
mLK, ASO NC, totalRNA, rep1 |
| GSM7720944 |
mLK, ASO NC, totalRNA, rep2 |
| GSM7720945 |
mLK, ASO NC, totalRNA, rep3 |
| GSM7720946 |
mLK, ASO IAP, totalRNA, rep1 |
| GSM7720947 |
mLK, ASO IAP, totalRNA, rep2 |
| GSM7720948 |
mLK, ASO IAP, totalRNA, rep3 |
| GSM7720949 |
K562, TET2WT shControl, mRNA, rep1 |
| GSM7720950 |
K562, TET2WT shControl, mRNA, rep2 |
| GSM7720951 |
K562, TET2WT shControl, mRNA, rep3 |
| GSM7720952 |
K562, TET2WT shMBD6, mRNA, rep1 |
| GSM7720953 |
K562, TET2WT shMBD6, mRNA, rep2 |
| GSM7720954 |
K562, TET2WT shMBD6, mRNA, rep3 |
| GSM7720955 |
K562, TET2KO shControl, mRNA, rep1 |
| GSM7720956 |
K562, TET2KO shControl, mRNA, rep2 |
| GSM7720957 |
K562, TET2KO shControl, mRNA, rep3 |
| GSM7720958 |
K562, TET2KO shMBD6, mRNA, rep1 |
| GSM7720959 |
K562, TET2KO shMBD6, mRNA, rep2 |
| GSM7720960 |
K562, TET2KO shMBD6, mRNA, rep3 |
| GSM7727494 |
mESC, Tet2 WT, caRNA, rep1 |
| GSM7727495 |
mESC, Tet2 WT, caRNA, rep2 |
| GSM7727496 |
mESC, Tet2 WT, caRNA, rep3 |
| GSM7727497 |
mESC, Tet2 KO, caRNA, rep1 |
| GSM7727498 |
mESC, Tet2 KO, caRNA, rep2 |
| GSM7727499 |
mESC, Pspc1 WT, caRNA, rep1 |
| GSM7727500 |
mESC, Pspc1 WT, caRNA, rep2 |
| GSM7727501 |
mESC, Pscp1 WT, caRNA, rep3 |
| GSM7727502 |
mESC, Pspc1 KO, caRNA, rep1 |
| GSM7727503 |
mESC, Pspc1 KO, caRNA, rep2 |
| GSM7727504 |
mESC, Pspc1 KO, caRNA, rep3 |
| GSM7727505 |
mESC, siControl, caRNA, rep1 |
| GSM7727506 |
mESC, siControl, caRNA, rep2 |
| GSM7727507 |
mESC, siControl, caRNA, rep3 |
| GSM7727508 |
mESC, siNsun2, caRNA, rep1 |
| GSM7727509 |
mESC, siNsun2, caRNA, rep2 |
| GSM7727510 |
mESC, siNsun2, caRNA, rep3 |
| GSM7727511 |
K562, TET2WT shControl, caRNA, rep1 |
| GSM7727512 |
K562, TET2WT shControl, caRNA, rep2 |
| GSM7727513 |
K562, TET2WT shControl, caRNA, rep3 |
| GSM7727514 |
K562, TETWT shMBD6, caRNA, rep1 |
| GSM7727515 |
K562, TETWT shMBD6, caRNA, rep2 |
| GSM7727516 |
K562, TETWT shMBD6, caRNA, rep3 |
| GSM7727517 |
K562, TET2KO shControl, caRNA, rep1 |
| GSM7727518 |
K562, TET2KO shControl, caRNA, rep2 |
| GSM7727519 |
K562, TET2KO shControl, caRNA, rep3 |
| GSM7727520 |
K562, TET2KO shMBD6, caRNA, rep1 |
| GSM7727521 |
K562, TET2KO shMBD6, caRNA, rep2 |
| GSM7727522 |
K562, TET2KO shMBD6, caRNA, rep3 |
| GSM7727531 |
mESC, Flag-MBD5, CLIP, rep1 |
| GSM7727532 |
mESC, Flag-MBD5, CLIP, rep2 |
| GSM7727533 |
mESC, Flag-MBD5, Input, rep1 |
| GSM7727534 |
mESC, Flag-MBD5, Input, rep2 |
| GSM7727535 |
mESC, Flag-MBD6, CLIP, rep1 |
| GSM7727536 |
mESC, Flag-MBD6, CLIP, rep2 |
| GSM7727537 |
mESC, Flag-MBD6, Input, rep1 |
| GSM7727538 |
mESC, Flag-MBD6, Input, rep2 |
| GSM8331399 |
mESC, WT, ATAC, r1, set1 |
| GSM8331400 |
mESC, WT, ATAC, r2, set1 |
| GSM8331401 |
mESC, WT, ATAC, r3, set1 |
| GSM8331402 |
mESC, Tet2 KO, ATAC, r1, set1 |
| GSM8331403 |
mESC, Tet2 KO, ATAC, r2, set1 |
| GSM8331404 |
mESC, Tet2 KO, ATAC, r3, set1 |
| GSM8331405 |
mESC, WT; siNC, ATAC, r1, set1 |
| GSM8331406 |
mESC, WT; siNC, ATAC, r2, set1 |
| GSM8331407 |
mESC, WT; siNC, ATAC, r3, set1 |
| GSM8331408 |
mESC, Tet2 KO; siNC, ATAC, r1, set1 |
| GSM8331409 |
mESC, Tet2 KO; siNC, ATAC, r2, set1 |
| GSM8331410 |
mESC, Tet2 KO; siNC, ATAC, r3, set1 |
| GSM8331411 |
mESC, Tet2 KO; siMbd6, ATAC, r1, set1 |
| GSM8331412 |
mESC, Tet2 KO; siMbd6, ATAC, r2, set1 |
| GSM8331413 |
mESC, Tet2 KO; siMbd6, ATAC, r3, set1 |
| GSM8331414 |
mESC, Tet2 KO; siNsun2, ATAC, r1, set1 |
| GSM8331415 |
mESC, Tet2 KO; siNsun2, ATAC, r2, set1 |
| GSM8331416 |
mESC, Tet2 KO; siNsun2, ATAC, r3, set1 |
| GSM8331417 |
mESC, WT, ATAC, r1, set2 |
| GSM8331418 |
mESC, WT, ATAC, r2, set2 |
| GSM8331419 |
mESC, WT, ATAC, r3, set2 |
| GSM8331420 |
mESC, Pspc1 KO, ATAC, r1, set2 |
| GSM8331421 |
mESC, Pspc1 KO, ATAC, r2, set2 |
| GSM8331422 |
mESC, Pspc1 KO, ATAC, r3, set2 |
| GSM8331423 |
mESC, Tet2 KO; EV OE, ATAC, r1, set2 |
| GSM8331424 |
mESC, Tet2 KO; EV OE, ATAC, r2, set2 |
| GSM8331425 |
mESC, Tet2 KO; EV OE, ATAC, r3, set2 |
| GSM8331426 |
mESC, Tet2 KO; WT OE, ATAC, r1, set2 |
| GSM8331427 |
mESC, Tet2 KO; WT OE, ATAC, r2, set2 |
| GSM8331428 |
mESC, Tet2 KO; WT OE, ATAC, r3, set2 |
| GSM8331429 |
mESC, Tet2 KO; HxD OE, ATAC, r1, set2 |
| GSM8331430 |
mESC, Tet2 KO; HxD OE, ATAC, r2, set2 |
| GSM8331431 |
mESC, Tet2 KO; HxD OE, ATAC, r3, set2 |
| GSM8331432 |
mHSPC, WT; shNC, ATAC, r1 |
| GSM8331433 |
mHSPC, WT; shNC, ATAC, r2 |
| GSM8331434 |
mHSPC, WT; shNC, ATAC, r3 |
| GSM8331435 |
mHSPC, Tet2 KO; shNC, ATAC, r1 |
| GSM8331436 |
mHSPC, Tet2 KO; shNC, ATAC, r2 |
| GSM8331437 |
mHSPC, Tet2 KO; shNC, ATAC, r3 |
| GSM8331438 |
mHSPC, Tet2 KO; shMbd6, ATAC, r1 |
| GSM8331439 |
mHSPC, Tet2 KO; shMbd6, ATAC, r2 |
| GSM8331440 |
mHSPC, Tet2 KO; shMbd6, ATAC, r3 |
| GSM8331441 |
K562, WT; siNC, ATAC, r1 |
| GSM8331442 |
K562, WT; siNC, ATAC, r2 |
| GSM8331443 |
K562, WT; siNC, ATAC, r3 |
| GSM8331444 |
K562, TET2 KO; siNC, ATAC, r1 |
| GSM8331445 |
K562, TET2 KO; siNC, ATAC, r2 |
| GSM8331446 |
K562, TET2 KO; siNC, ATAC, r3 |
| GSM8331447 |
K562, TET2 KO; siMBD6; siNC, ATAC, r1 |
| GSM8331448 |
K562, TET2 KO; siMBD6; siNC, ATAC, r2 |
| GSM8331449 |
K562, TET2 KO; siMBD6; siNC, ATAC, r3 |
| GSM8331450 |
K562, TET2 KO; siNSUN2; siNC, ATAC, r1 |
| GSM8331451 |
K562, TET2 KO; siNSUN2; siNC, ATAC, r2 |
| GSM8331452 |
K562, TET2 KO; siNSUN2; siNC, ATAC, r3 |
| GSM8331453 |
mESC, WT, BAP1, CUT&Tag, r1 |
| GSM8331454 |
mESC, WT, BAP1, CUT&Tag, r2 |
| GSM8331455 |
mESC, WT, H2AK119ub, CUT&Tag, r1 |
| GSM8331456 |
mESC, WT, H2AK119ub, CUT&Tag, r2 |
| GSM8331457 |
mESC, WT, H2AK119ub, CUT&Tag, r3 |
| GSM8331458 |
mESC, Tet2 KO, H2AK119ub, CUT&Tag, r1 |
| GSM8331459 |
mESC, Tet2 KO, H2AK119ub, CUT&Tag, r2 |
| GSM8331460 |
mESC, Tet2 KO, H2AK119ub, CUT&Tag, r3 |
| GSM8331461 |
mESC, WT; siNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331462 |
mESC, WT; siNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331463 |
mESC, WT; siNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331464 |
mESC, Tet2 KO; siNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331465 |
mESC, Tet2 KO; siNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331466 |
mESC, Tet2 KO; siNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331467 |
mESC, Tet2 KO; siMbd6, H2AK119ub, CUT&Tag, r1 |
| GSM8331468 |
mESC, Tet2 KO; siMbd6, H2AK119ub, CUT&Tag, r2 |
| GSM8331469 |
mESC, Tet2 KO; siMbd6, H2AK119ub, CUT&Tag, r3 |
| GSM8331470 |
mESC, Tet2 KO; siNsun2, H2AK119ub, CUT&Tag, r1 |
| GSM8331471 |
mESC, Tet2 KO; siNsun2, H2AK119ub, CUT&Tag, r2 |
| GSM8331472 |
mESC, Tet2 KO; siNsun2, H2AK119ub, CUT&Tag, r3 |
| GSM8331473 |
mHSPC, WT; shNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331474 |
mHSPC, WT; shNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331475 |
mHSPC, WT; shNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331476 |
mHSPC, Tet2 KO; shNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331477 |
mHSPC, Tet2 KO; shNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331478 |
mHSPC, Tet2 KO; shNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331479 |
mHSPC, Tet2 KO; shMbd6, H2AK119ub, CUT&Tag, r1 |
| GSM8331480 |
mHSPC, Tet2 KO; shMbd6, H2AK119ub, CUT&Tag, r2 |
| GSM8331481 |
mHSPC, Tet2 KO; shMbd6, H2AK119ub, CUT&Tag, r3 |
| GSM8331482 |
K562, WT; siNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331483 |
K562, WT; siNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331484 |
K562, WT; siNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331485 |
K562, TET2 KO; siNC, H2AK119ub, CUT&Tag, r1 |
| GSM8331486 |
K562, TET2 KO; siNC, H2AK119ub, CUT&Tag, r2 |
| GSM8331487 |
K562, TET2 KO; siNC, H2AK119ub, CUT&Tag, r3 |
| GSM8331488 |
K562, TET2 KO; siMBD6, H2AK119ub, CUT&Tag, r1 |
| GSM8331489 |
K562, TET2 KO; siMBD6, H2AK119ub, CUT&Tag, r2 |
| GSM8331490 |
K562, TET2 KO; siMBD6, H2AK119ub, CUT&Tag, r3 |
| GSM8331491 |
K562, TET2 KO; siNSUN2, H2AK119ub, CUT&Tag, r1 |
| GSM8331492 |
K562, TET2 KO; siNSUN2, H2AK119ub, CUT&Tag, r2 |
| GSM8331493 |
K562, TET2 KO; siNSUN2, H2AK119ub, CUT&Tag, r3 |
| GSM8331494 |
mESC, WT; siNC, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331495 |
mESC, WT; siNC, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331496 |
mESC, WT; siNC, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331497 |
mESC, WT; siNsun2, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331498 |
mESC, WT; siNsun2, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331499 |
mESC, WT; siNsun2, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331500 |
mESC, Tet2 KO; siNC, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331501 |
mESC, Tet2 KO; siNC, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331502 |
mESC, Tet2 KO; siNC, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331503 |
mESC, Tet2 KO; siNsun2, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331504 |
mESC, Tet2 KO; siNsun2, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331505 |
mESC, Tet2 KO; siNsun2, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331506 |
mESC, WT, DNA, Input, MeDIP, r1 |
| GSM8331507 |
mESC, WT, DNA, Input, MeDIP, r2 |
| GSM8331508 |
mESC, WT, DNA, Input, MeDIP, r3 |
| GSM8331509 |
mESC, Pspc1 KO, DNA, Input, MeDIP, r1 |
| GSM8331510 |
mESC, Pspc1 KO, DNA Input, MeDIP, r2 |
| GSM8331511 |
mESC, Pspc1 KO, DNA, Input, MeDIP, r3 |
| GSM8331512 |
mESC, WT, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331513 |
mESC, WT, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331514 |
mESC, WT, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331515 |
mESC, Pspc1 KO, DNA, 5mC-IP, MeDIP, r1 |
| GSM8331516 |
mESC, Pspc1 KO, DNA, 5mC-IP, MeDIP, r2 |
| GSM8331517 |
mESC, Pspc1 KO, DNA, 5mC-IP, MeDIP, r3 |
| GSM8331518 |
mESC, WT; siNC, caRNA, RNA, r1 |
| GSM8331519 |
mESC, WT; siNC, caRNA, RNA, r2 |
| GSM8331520 |
mESC, WT; siNC, caRNA, RNA, r3 |
| GSM8331521 |
mESC, WT; siNsun2, caRNA, RNA, r1 |
| GSM8331522 |
mESC, WT; siNsun2, caRNA, RNA, r2 |
| GSM8331523 |
mESC, WT; siNsun2, caRNA, RNA, r3 |
| GSM8331524 |
mESC, Tet2 KO; siNC, caRNA, RNA, r1 |
| GSM8331525 |
mESC, Tet2 KO; siNC, caRNA, RNA, r2 |
| GSM8331526 |
mESC, Tet2 KO; siNC, caRNA, RNA, r3 |
| GSM8331527 |
mESC, Tet2 KO; siNsun2, caRNA, RNA, r1 |
| GSM8331528 |
mESC, Tet2 KO; siNsun2, caRNA, RNA, r2 |
| GSM8331529 |
mESC, Tet2 KO; siNsun2, caRNA, RNA, r3 |
| GSM8331530 |
mESC, WT, caRNA, RNA, r1 |
| GSM8331531 |
mESC, WT, caRNA, RNA, r2 |
| GSM8331532 |
mESC, WT, caRNA, RNA, r3 |
| GSM8331533 |
mESC, Pspc1 KO, caRNA, RNA, r1 |
| GSM8331534 |
mESC, Pspc1 KO, caRNA, RNA, r2 |
| GSM8331535 |
mESC, Pspc1 KO, caRNA, RNA, r3 |
| GSM8331536 |
mESC, Tet2 KO; FH OE, caRNA, RNA, r1 |
| GSM8331537 |
mESC, Tet2 KO; FH OE, caRNA, RNA, r2 |
| GSM8331538 |
mESC, Tet2 KO; FH OE, caRNA, RNA, r3 |
| GSM8331539 |
mESC, Tet2 KO; WT OE, caRNA, RNA, r1 |
| GSM8331540 |
mESC, Tet2 KO; WT OE, caRNA, RNA, r2 |
| GSM8331541 |
mESC, Tet2 KO; WT OE, caRNA, RNA, r3 |
| GSM8331542 |
mESC, Tet2 KO; HxD OE, caRNA, RNA, r1 |
| GSM8331543 |
mESC, Tet2 KO; HxD OE, caRNA, RNA, r2 |
| GSM8331544 |
mESC, Tet2 KO; HxD OE, caRNA, RNA, r3 |
| GSM8377586 |
mESC, WT, caRNA, m5C-IP, MeRIP, r1 |
| GSM8377587 |
mESC, WT, caRNA, m5C-IP, MeRIP, r2 |
| GSM8377588 |
mESC, WT, caRNA, m5C-IP, MeRIP, r3 |
| GSM8377589 |
mESC, Tet2 KO, caRNA, m5C-IP, MeRIP, r1 |
| GSM8377590 |
mESC, Tet2 KO, caRNA, m5C-IP, MeRIP, r2 |
| GSM8377591 |
mESC, Tet2 KO, caRNA, m5C-IP, MeRIP, r3 |
| GSM8377592 |
K562, WT, caRNA, m5C-IP, MeRIP, r1 |
| GSM8377593 |
K562, WT, caRNA, m5C-IP, MeRIP, r2 |
| GSM8377594 |
K562, WT, caRNA, m5C-IP, MeRIP, r3 |
| GSM8377595 |
K562, TET2 KO, caRNA, m5C-IP, MeRIP, r1 |
| GSM8377596 |
K562, TET2 KO, caRNA, m5C-IP, MeRIP, r2 |
| GSM8377597 |
K562, TET2 KO, caRNA, m5C-IP, MeRIP, r3 |
| GSM8377598 |
mESC, WT, caRNA, UBS Amplicon, r1 |
| GSM8377599 |
mESC, WT, caRNA, UBS Amplicon, r2 |
| GSM8377600 |
mESC, WT, caRNA, UBS Amplicon, r3 |
| GSM8377601 |
mESC, Tet2 KO, caRNA, UBS Amplicon, r1 |
| GSM8377602 |
mESC, Tet2 KO, caRNA, UBS Amplicon, r2 |
| GSM8377603 |
mESC, Tet2 KO, caRNA, UBS Amplicon, r3 |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE241299 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_DNA-ATAC] |
| GSE241304 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_DNA-CUTandTag] |
| GSE241308 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-caRNA-m5C-MeRIP] |
| GSE241310 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-nascentRNA] |
| GSE241311 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-totalRNA] |
| GSE241342 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-caRNA] |
| GSE241345 |
TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-CLIP] |
| GSE269958 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_DNA-ATAC_set2] |
| GSE269959 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_DNA-CUTandTag] |
| GSE269960 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_DNA-MeDIP] |
| GSE269961 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_RNA-caRNA] |
| GSE271463 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_RNA-caRNA-m5C-MeRIP] |
| GSE271464 |
Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_RNA-caRNA-UBS-amplicon] |
|
| Relations |
| BioProject |
PRJNA1007723 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE241347_RAW.tar |
3.8 Gb |
(http)(custom) |
TAR (of BED, BIGWIG, BROADPEAK, NARROWPEAK, TXT) |
SRA Run Selector |
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