|
| Status |
Public on Aug 18, 2023 |
| Title |
New functions of pirin proteins and a 2-ketoglutarate: Ferredoxin oxidoreductase ortholog in Bacteroides fragilis metabolism and their impact on antimicrobial susceptibility to metronidazole and amixicile |
| Organism |
Bacteroides fragilis 638R |
| Experiment type |
Expression profiling by array
|
| Summary |
Genome expression study of Bacteroides fragilis strain 638R comparing an fur deletion mutant with the wild-type strain grown in minimal defined media with iron-replete, iron-limiting, heme-replete and heme-limiting conditions.
The construction of the fur mutant analyzed in this study was described in Robertson KP, Smith CJ, Gough AM, Rocha ER. Characterization of Bacteroides fragilis hemolysins and regulation and synergistic interactions of HlyA and HlyB. Infect Immun. 2006 74:2304-2316.
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| |
|
| Overall design |
Twelve chip study with 8 technical replicate on each chip comparing iron and heme regulated genes in the wild-type strain and fur deletion mutant.
|
| Web link |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11304471/
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| |
|
| Contributor(s) |
Smith CJ, Rocha ER |
| Citation(s) |
39109824 |
| |
| Submission date |
Aug 18, 2023 |
| Last update date |
Sep 03, 2024 |
| Contact name |
Edson R Rocha |
| E-mail(s) |
rochae@ecu.edu
|
| Phone |
252-744-9563
|
| Organization name |
East Carolina University Brody School of Medicine
|
| Department |
M
|
| Lab |
Biotech Bldg. Room 130
|
| Street address |
600 Moye Blvd.
|
| City |
Greenville |
| State/province |
NC |
| ZIP/Postal code |
27834 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL15788 |
NimbleGen Bacteroides fragilis 638R custom array [091125_Bfra_CJS_exp] |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA1006733 |
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