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Series GSE24061 Query DataSets for GSE24061
Status Public on Sep 10, 2010
Title MAQC-II Project: Hamner data set
Organism Mus musculus
Experiment type Expression profiling by array
Summary The Hamner data set (endpoint A) was provided by The Hamner Institutes for Health Sciences (Research Triangle Park, NC, USA). The study objective was to apply microarray gene expression data from the lung of female B6C3F1 mice exposed to a 13-week treatment of chemicals to predict increased lung tumor incidence in the 2-year rodent cancer bioassays of the National Toxicology Program. If successful, the results may form the basis of a more efficient and economical approach for evaluating the carcinogenic activity of chemicals. Microarray analysis was performed using Affymetrix Mouse Genome 430 2.0 arrays on three to four mice per treatment group, and a total of 70 mice were analyzed and used as the MAQC-II's training set (GEO Series GSE6116). Additional data from another set of 88 mice were collected later and provided as the MAQC-II's external validation set (this Series). The training dataset had already been deposited in GEO by its provider and its accession number is GSE6116.
 
Overall design 88 Samples
 
Citation(s) 20064235, 20676074
Submission date Sep 09, 2010
Last update date Feb 11, 2019
Contact name Leming Shi
E-mail leming.shi@gmail.com
Phone +86-18616827008
Organization name Fudan Univresity
Department School of Life Sciences
Lab Center for Pharmacogenomics
Street address 2005 Songhu Road
City Shanghai
ZIP/Postal code 200438
Country China
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (88)
GSM591970 RT_0_13_116_ACO3_Lung_07008_Mouse430_2_RSTLRI000_2
GSM591971 RT_0_13_117_ACO3_Lung_07008_Mouse430_2_RSTLRI000_2
GSM591972 RT_0_13_119_ACO3_Lung_07008_Mouse430_2_RSTLRI000_2
This SubSeries is part of SuperSeries:
GSE16716 MicroArray Quality Control Phase II (MAQC-II) Project
Relations
BioProject PRJNA130145

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE24061_RAW.tar 412.3 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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