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| Status |
Public on Jun 03, 2024 |
| Title |
Chromatin accessibility profiling in wild-type naïve, 1h, or 24h in vitro stimulated P14 CD8+ T cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To investigate the kinetics of chromatin accessibility dynamics in activated CD8+ T cells, we stimulated naïve P14 CD8+ T cells in vitro for 0h, 1h, or 24h
We then performed chromatin accessibility profiling analysis by ATAC-seq
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| Overall design |
Chromatin accessibility profiling analysis by ATAC-seq for WT P14 CD8+ T cells at 0h (naïve), 1h, or 24h-post stimulation with anti-CD3, anti-CD28, and recombinant IL-2 in vitro
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| Contributor(s) |
McDonald B, Chick B |
| Citation(s) |
38161581 |
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| Submission date |
Jun 30, 2023 |
| Last update date |
Jun 04, 2024 |
| Contact name |
Bryan McDonald |
| E-mail(s) |
bmcdonald@salk.edu
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| Organization name |
Salk Institute for Biological Studies
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| Street address |
10010 N Torrey Pines Rd
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA989652 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE236306_RAW.tar |
410.8 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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