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GEO help: Mouse over screen elements for information. |
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Status |
Public on Feb 29, 2024 |
Title |
β-catenin and Hoxa9 preserve DNA replication dynamics, genomic integrity and stem cell functionality in a Prmt1-dependent manner |
Organism |
Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
38211335 |
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Submission date |
Jun 26, 2023 |
Last update date |
Jun 06, 2024 |
Contact name |
Eric So |
E-mail(s) |
eric.so@kcl.ac.uk
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Organization name |
KCL
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Lab |
So Lab
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Street address |
School of Cancer and Pharmaceutical Sciences
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City |
London |
ZIP/Postal code |
SE5 9NU |
Country |
United Kingdom |
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Platforms (2) |
GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (35)
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GSM7510064 |
HOXA9_KO, replicate 2, ATAC-seq |
GSM7510065 |
PRMT1_KO, replicate 1, ATAC-seq |
GSM7510066 |
PRMT1_KO, replicate 2, ATAC-seq |
GSM7510067 |
WT, replicate 1, ATAC-seq |
GSM7510068 |
WT, replicate 2, ATAC-seq |
GSM7510069 |
dKO, replicate 1, ATAC-seq |
GSM7510070 |
HOXA9_KO, replicate 1, RNA-seq |
GSM7510071 |
HOXA9_KO, replicate 2, RNA-seq |
GSM7510072 |
PRMT1_KO, replicate 1, RNA-seq |
GSM7510073 |
PRMT1_KO, replicate 2, RNA-seq |
GSM7510074 |
WT_PRMT1, replicate 1, RNA_seq |
GSM7510075 |
WT_PRMT1, replicate 2, RNA_seq |
GSM7510076 |
WT, replicate 1, RNA_seq |
GSM7510077 |
WT, replicate 2, RNA_seq |
GSM7510078 |
dKO, replicate 1, RNA-seq |
GSM7510079 |
dKO, replicate 2, RNA-seq |
GSM7510080 |
Bcat_KO, replicate 1, RNA-seq |
GSM7510081 |
Bcat_KO, replicate 2, RNA-seq |
GSM7510082 |
WTEV, replicate 1, RNA-seq |
GSM7510083 |
WTEV, replicate 2, RNA-seq |
GSM7510084 |
dKOEV, replicate 1, RNA-seq |
GSM7510085 |
dKOEV, replicate 2, RNA-seq |
GSM7510086 |
dKOMut, replicate 1, RNA-seq |
GSM7510087 |
dKOMut, replicate 2, RNA-seq |
GSM7510088 |
dKOPRMT, replicate 1, RNA-seq |
GSM7510089 |
dKOPRMT, replicate 2, RNA-seq |
GSM7928231 |
ckit+WT ms BM, IgG, replicate 1, CUT&RUN |
GSM7928232 |
ckit+ WT ms BM, IgG, replicate 2, CUT&RUN |
GSM7928233 |
ckit+ WT ms BM, HOXA9, replicate 1, CUT&RUN |
GSM7928234 |
ckit+ WT ms BM, HOXA9, replicate 2, CUT&RUN |
GSM7928235 |
CTNB ckit+ BM, IgG, replicate 1, CUT&RUN |
GSM7928236 |
CTNB ckit+ BM, FLAG, replicate 1, CUT&RUN |
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This SuperSeries is composed of the following SubSeries:
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GSE235815 |
β-catenin and Hoxa9 preserve DNA replication dynamics, genomic integrity and stem cell functionality in a Prmt1-dependent manner [ATAC-Seq] |
GSE235816 |
β-catenin and Hoxa9 preserve DNA replication dynamics, genomic integrity and stem cell functionality in a Prmt1-dependent manner [RNA-seq LSK] |
GSE235817 |
β-catenin and Hoxa9 preserve DNA replication dynamics, genomic integrity and stem cell functionality in a Prmt1-dependent manner [RNA-seq dKO_HSPCs] |
GSE249199 |
β-catenin and Hoxa9 preserve DNA replication dynamics, genomic integrity and stem cell functionality in a Prmt1-dependent manner [CUT&RUN] |
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Relations |
BioProject |
PRJNA987671 |
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