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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 26, 2023 |
| Title |
Genetic vulnerability to healing reveals a spatially resolved epithelial restitution program |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.science.org/doi/10.1126/scitranslmed.adg5252
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| Citation(s) |
37878672 |
| |
| Submission date |
Jun 26, 2023 |
| Last update date |
Oct 27, 2023 |
| Contact name |
Ramnik Xavier |
| E-mail(s) |
xaviergeo@broadinstitute.org
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| Organization name |
Broad Institute of MIT and Harvard
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| Lab |
Xavier Lab
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| Street address |
415 Main Street
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL21273 |
HiSeq X Ten (Mus musculus) |
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| Samples (54)
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| GSM7508652 |
NIH3T3 cells, control, 8h, 1 |
| GSM7508653 |
NIH3T3 cells, control, 8h, 2 |
| GSM7508654 |
NIH3T3 cells, control, 8h, 3 |
| GSM7508655 |
NIH3T3 cells, RA, 8h, 1 |
| GSM7508656 |
NIH3T3 cells, RA, 8h, 2 |
| GSM7508657 |
NIH3T3 cells, RA, 8h, 3 |
| GSM7508658 |
NIH3T3 cells, control, 16h, 1 |
| GSM7508659 |
NIH3T3 cells, control, 16h, 2 |
| GSM7508660 |
NIH3T3 cells, control, 16h, 3 |
| GSM7508661 |
NIH3T3 cells, RA, 16h, 1 |
| GSM7508662 |
NIH3T3 cells, RA, 16h, 2 |
| GSM7508663 |
NIH3T3 cells, RA, 16h, 3 |
| GSM7508664 |
Colon_Control_0h_1 |
| GSM7508665 |
Colon_Control_0h_2 |
| GSM7508666 |
Colon_Control_0h_3 |
| GSM7508667 |
Colon_Control_2h_1 |
| GSM7508668 |
Colon_Control_2h_2 |
| GSM7508669 |
Colon_Control_2h_3 |
| GSM7508670 |
Colon_Control_4h_1 |
| GSM7508671 |
Colon_Control_4h_2 |
| GSM7508672 |
Colon_Control_4h_3 |
| GSM7508673 |
Colon_Control_6h_1 |
| GSM7508674 |
Colon_Control_6h_2 |
| GSM7508675 |
Colon_Control_6h_3 |
| GSM7508676 |
Colon_MSP_0h_1 |
| GSM7508677 |
Colon_MSP_0h_2 |
| GSM7508678 |
Colon_MSP_0h_3 |
| GSM7508679 |
Colon_MSP_2h_1 |
| GSM7508680 |
Colon_MSP_2h_2 |
| GSM7508681 |
Colon_MSP_2h_3 |
| GSM7508682 |
Colon_MSP_4h_1 |
| GSM7508683 |
Colon_MSP_4h_2 |
| GSM7508684 |
Colon_MSP_4h_3 |
| GSM7508685 |
Colon_MSP_6h_1 |
| GSM7508686 |
Colon_MSP_6h_2 |
| GSM7508687 |
Colon_MSP_6h_3 |
| GSM7508771 |
Hgfac KO intact tissue_1 |
| GSM7508772 |
Hgfac KO intact tissue_2 |
| GSM7508773 |
Hgfac KO intact tissue_3 |
| GSM7508774 |
Hgfac KO day2 wound_1 |
| GSM7508775 |
Hgfac KO day2 wound_3 |
| GSM7508776 |
Hgfac KO day2 wound_2 |
| GSM7508777 |
Hgfac WT intact tissue_1 |
| GSM7508778 |
Hgfac WT intact tissue_2 |
| GSM7508779 |
Hgfac WT intact tissue_3 |
| GSM7508780 |
Hgfac WT day2 wound_1 |
| GSM7508781 |
Hgfac WT day2 wound_2 |
| GSM7508782 |
Hgfac WT day2 wound_3 |
| GSM7508783 |
Hgfac WT intact tissues, 3 biological reps |
| GSM7508784 |
Hgfac WT day2 wounds, 3 biological reps |
| GSM7508785 |
Hgfac KO day2 wounds, 3 biological reps |
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| This SuperSeries is composed of the following SubSeries:
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| GSE235732 |
Retinoic acid-induced Transcriptional Signature in Mouse Fibroblast cells |
| GSE235733 |
MSP-induced Transcriptional Signature in Mouse Primary Colonic Epithelial Cells |
| GSE235741 |
Single-Cell Transcriptomic Profiling of colonic wounds and intact tissues in Hgfac WT and KO mice |
| GSE235742 |
Spatial Transcriptomic profiling of day2 wounds and intact tissues of Hgfac WT and KO mice |
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| Relations |
| BioProject |
PRJNA987543 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE235743_RAW.tar |
561.0 Mb |
(http)(custom) |
TAR (of CSV, JPG, JSON, MTX, PNG, SF, TSV) |
SRA Run Selector |
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