NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE235411 Query DataSets for GSE235411
Status Public on Jun 30, 2023
Title Chromatin remodeling events associated with gARID are essential for gametocyte development in Plasmodium [RNA-seq]
Organism Plasmodium berghei ANKA
Experiment type Expression profiling by high throughput sequencing
Summary Plasmodium berghei transcriptomes of wild-type ANKA (WT) and garid knockout parasites [garid(-)] were analyzed at the gametocyte stage.
 
Overall design WT and garid(-) were harvested after sulfadiazine treatment, and total RNA was extracted from the parasites. Libraries were constructed from the total RNA and then sequenced by the Next Generation Sequencing.
 
Contributor(s) Nishi T, Kaneko I, Iwanaga S, Yuda M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 21, 2023
Last update date Jun 30, 2023
Contact name masao yuda
E-mail(s) m-yuda@doc.medic.mie-u.ac.jp
Organization name mie university
Street address edobashi 2-174
City tsu
State/province mie
ZIP/Postal code 514-0001
Country Japan
 
Platforms (1)
GPL33514 DNBSEQ-G400 (Plasmodium berghei ANKA)
Samples (6)
GSM7501996 WT gametocyte, rep1
GSM7501997 WT gametocyte, rep2
GSM7501998 WT gametocyte, rep3
This SubSeries is part of SuperSeries:
GSE235412 Chromatin remodeling events associated with gARID are essential for gametocyte development in Plasmodium
Relations
BioProject PRJNA986005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235411_WT_Gam_RNA-seq_count.txt.gz 57.9 Kb (ftp)(http) TXT
GSE235411_garid_-_RNA-seq_count.txt.gz 56.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap