 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 13, 2024 |
| Title |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| Web link |
https://www.cell.com/immunity/fulltext/S1074-7613(24)00080-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1074761324000803%3Fshowall%3Dtrue
|
| |
|
| Citation(s) |
38430908 |
| |
| Submission date |
Jun 14, 2023 |
| Last update date |
Sep 28, 2024 |
| Contact name |
Stephen Smale |
| E-mail(s) |
smale.geo.uploads@gmail.com
|
| Organization name |
University of California Los Angeles
|
| Department |
MIMG
|
| Lab |
Smale Lab
|
| Street address |
6-730 MRL 675 Charles E. Young Drive South
|
| City |
Los Angeles |
| State/province |
Ca |
| ZIP/Postal code |
90024 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL21493 |
Illumina HiSeq 3000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (133)
|
| GSM7473436 |
BMDM_30_r1 |
| GSM7473437 |
BMDM_30_r2 |
| GSM7473438 |
BMDM_60_r1 |
| GSM7473439 |
BMDM_60_r2 |
| GSM7473440 |
BMDM_120_r1 |
| GSM7473441 |
BMDM_120_r2 |
| GSM7473442 |
BMDM_120_r3 |
| GSM7473443 |
BMDM_120_r4 |
| GSM7473444 |
BMDM_120_r5 |
| GSM7473445 |
BMDM_120x_r1 |
| GSM7473446 |
BMDM_120x_r2 |
| GSM7473447 |
IRF3ko_0_r1 |
| GSM7473448 |
IRF3ko_0_r2 |
| GSM7473449 |
IRF3ko_120_r1 |
| GSM7473450 |
IRF3ko_120_r2 |
| GSM7473451 |
IRF3ko_120x_r1 |
| GSM7473452 |
IRF3ko_120x_r2 |
| GSM7476405 |
WT_0 _r1 |
| GSM7476406 |
WT_0 _r2 |
| GSM7476407 |
WT_15 _r1 |
| GSM7476408 |
WT_15 _r2 |
| GSM7476409 |
WT_30 _r1 |
| GSM7476410 |
WT_30 _r2 |
| GSM7476411 |
WT_60 _r1 |
| GSM7476412 |
WT_60 _r2 |
| GSM7476413 |
WT_120 _r1 |
| GSM7476414 |
WT_120 _r2 |
| GSM7476415 |
DKO_r1_0 |
| GSM7476416 |
DKO_r2_0 |
| GSM7476417 |
DKO_r1_15 |
| GSM7476418 |
DKO_r2_15 |
| GSM7476419 |
DKO_r1_30 |
| GSM7476420 |
DKO_r2_30 |
| GSM7476421 |
DKO_r1_60 |
| GSM7476422 |
DKO_r2_60 |
| GSM7476423 |
DKO_r1_120 |
| GSM7476424 |
DKO_r2_120 |
| GSM7476425 |
EnDel_0 |
| GSM7476426 |
EnDel_15 |
| GSM7476427 |
EnDel_30 |
| GSM7476428 |
EnDel_60 |
| GSM7476429 |
EnDel_120 |
| GSM7498273 |
BMDM, Brg1, unstimulated |
| GSM7498274 |
BMDM, Brg1, stimulated 2h |
| GSM7498275 |
BMDM, Brg1, input control |
| GSM7498276 |
BMDM, Irf3, unstimulated, r1 |
| GSM7498277 |
BMDM, Irf3, unstimulated, r2 |
| GSM7498278 |
BMDM, Irf3, stimulated 15', r1 |
| GSM7498279 |
BMDM, Irf3, stimulated 15', r2 |
| GSM7498280 |
BMDM, Irf3, stimulated 30', r1 |
| GSM7498281 |
BMDM, Irf3, stimulated 30', r2 |
| GSM7498282 |
BMDM, Irf3, stimulated 60', r1 |
| GSM7498283 |
BMDM, Irf3, stimulated 60', r2 |
| GSM7498284 |
BMDM, Irf3, stimulated 120', r1 |
| GSM7498285 |
BMDM, Irf3, stimulated 120', r2 |
| GSM7498286 |
BMDM, Irf3, input control, r1 |
| GSM7498287 |
BMDM, Irf3, input control, r2 |
| GSM7498288 |
BMDM, RelA, unstimulated, r1 |
| GSM7498289 |
BMDM, RelA, unstimulated, r2 |
| GSM7498290 |
BMDM, RelA, stimulated 15', r1 |
| GSM7498291 |
BMDM, RelA, stimulated 15', r2 |
| GSM7498292 |
BMDM, RelA, stimulated 30', r1 |
| GSM7498293 |
BMDM, RelA, stimulated 30', r2 |
| GSM7498294 |
BMDM, RelA, stimulated 60', r1 |
| GSM7498295 |
BMDM, RelA, stimulated 60', r2 |
| GSM7498296 |
BMDM, RelA, stimulated 120', r1 |
| GSM7498297 |
BMDM, RelA, stimulated 120', r2 |
| GSM7498298 |
BMDM, RelA, input control, r1 |
| GSM7498299 |
BMDM, RelA, input control, r2 |
| GSM7498300 |
BMDM, chrRNA, unstimulated, r1 |
| GSM7498301 |
BMDM, chrRNA, unstimulated, r2 |
| GSM7498302 |
BMDM, chrRNA, stimulated 15', r1 |
| GSM7498303 |
BMDM, chrRNA, stimulated 15', r2 |
| GSM7498304 |
BMDM, chrRNA, stimulated 30', r1 |
| GSM7498305 |
BMDM, chrRNA, stimulated 30', r2 |
| GSM7498306 |
BMDM, chrRNA, stimulated 60', r1 |
| GSM7498307 |
BMDM, chrRNA, stimulated 60', r2 |
| GSM7498308 |
BMDM, chrRNA, stimulated 120', r1 |
| GSM7498309 |
BMDM, chrRNA, stimulated 120', r2 |
| GSM7498310 |
MQ, WT, RNA, unstimulated, r1 |
| GSM7498311 |
MQ, WT, RNA, unstimulated, r2 |
| GSM7498312 |
MQ, WT, RNA, stimulated 2h, r1 |
| GSM7498313 |
MQ, WT, RNA, stimulated 2h, r2 |
| GSM7498314 |
MQ, DKO, RNA, unstimulated, r1 |
| GSM7498315 |
MQ, DKO, RNA, unstimulated, r2 |
| GSM7498316 |
MQ, DKO, RNA, stimulated 2h, r1 |
| GSM7498317 |
MQ, DKO, RNA, stimulated 2h, r2 |
| GSM7911236 |
C2_DKO_clone_0h_r1 |
| GSM7911237 |
C2_DKO_clone_0h_r2 |
| GSM7911238 |
C2_DKO_clone_2h_r1 |
| GSM7911239 |
C2_DKO_clone_2h_r2 |
| GSM7911240 |
C9_DKO_clone_0h_r1 |
| GSM7911241 |
C9_DKO_clone_2h_r1 |
| GSM7911242 |
WT_clone_0h_r1 |
| GSM7911243 |
WT_clone_0h_r2 |
| GSM7911244 |
WT_clone_2h_r1 |
| GSM7911245 |
WT_clone_2h_r2 |
| GSM7913887 |
PolyIC_2h_r1 |
| GSM7913888 |
Pam3_2h_r1 |
| GSM7913889 |
PolyIC_2h_r2 |
| GSM7913890 |
LipidA_2h_r2 |
| GSM7913891 |
Pam3_2h_r2 |
| GSM7913892 |
unstimulated_r2 |
| GSM7913893 |
PolyIC_2h_r3 |
| GSM7913894 |
LipidA_2h_r3 |
| GSM7913895 |
Pam3_2h_r3 |
| GSM7913896 |
unstimulated_r3 |
| GSM7913897 |
PolyIC_2h_r4 |
| GSM7913898 |
LipidA_2h_r4 |
| GSM7913899 |
Pam3_2h_r4 |
| GSM7919028 |
BMDM_LA_0h, scATAC-seq |
| GSM7919029 |
BMDM_LA_2h, scATAC-seq |
| GSM7920590 |
BMDM, P300, unstimulated, r1 |
| GSM7920591 |
BMDM, P300, unstimulated, r2 |
| GSM7920592 |
BMDM, P300, stimulated 120', r1 |
| GSM7920593 |
BMDM, P300, stimulated 120', r2 |
| GSM7920594 |
BMDM, P300, input control, r1 |
| GSM7920595 |
BMDM, P300, input control, r2 |
| GSM7920596 |
BMDM, H3K27ac, unstimulated, r1 |
| GSM7920597 |
BMDM, H3K27ac, unstimulated, r2 |
| GSM7920598 |
BMDM, H3K27ac, stimulated 120', r1 |
| GSM7920599 |
BMDM, H3K27ac, stimulated 120', r2 |
| GSM7920600 |
BMDM, H3K27ac, input control, r1 |
| GSM7920601 |
BMDM, H3K27ac, input control, r2 |
| GSM8340296 |
BMDM_peak68866_0h |
| GSM8340297 |
BMDM_peak68866_2h |
| GSM8340298 |
WT_clone_0h_r1, CHiC |
| GSM8340299 |
WT_clone_2h_r1, CHiC |
| GSM8340300 |
WT_clone_0h_r2, CHiC |
| GSM8340301 |
WT_clone_2h_r2, CHiC |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE234694 |
Toll-Like Receptor-induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [BMDM_ATAC] |
| GSE234913 |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [ATAC_MQ] |
| GSE235281 |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [ChIP-Seq] |
| GSE235282 |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [RNA-Seq] |
| GSE248432 |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [BMDM_ATAC_2] |
| GSE248713 |
NF-kB Broadly Orchestrates Nucleosome Remodeling during the Primary Response to Toll-Like Receptor 4 Signaling [scATAC-seq] |
| GSE270365 |
The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling [4C] |
| GSE270366 |
The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling [CHiC] |
|
| Relations |
| BioProject |
PRJNA983728 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE234914_RAW.tar |
23.1 Gb |
(http)(custom) |
TAR (of BED, BEDGRAPH, CSV, H5, HTML, TBI, TSV) |
SRA Run Selector |
|
|
|
|
 |
Less...
More...