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| Status |
Public on Sep 21, 2023 |
| Title |
5-methyl cytosine profile of the wild type and Mpmet mutant in Marchantia polymorpha |
| Organism |
Marchantia polymorpha |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
To understand a role of MpMET in maintenance of cytpsine methylation and transposon silencing, we obtained a genome wide profile of 5-methylated cytosine from the Mpmet mutant of a model liverwort, Marchantia polymorpha.
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| Overall design |
Tagmentation-based whole-genome bisulfite sequencing (T-WGBS) for a whole genome profile of cytosine methylation
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| Contributor(s) |
Fridrich A, Hisanaga T, Berger F |
| Citation missing |
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| |
| Submission date |
Jun 13, 2023 |
| Last update date |
Sep 21, 2023 |
| Contact name |
Tetsuya Hisanaga |
| E-mail(s) |
hisanaga.tetsuya@naist.ac.jp
|
| Phone |
+81 743 72 5563
|
| Organization name |
Nara Institute of Science and Technology
|
| Lab |
Nakajima Lab
|
| Street address |
Takayama 8916-5
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| City |
Ikoma |
| State/province |
Nara |
| ZIP/Postal code |
630-0192 |
| Country |
Japan |
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| Platforms (1) |
| GPL32971 |
NextSeq 2000 (Marchantia polymorpha) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE221635 |
Transposons repressed by H3K27me3 were co-opted as cis-regulatory elements of H3K27me3 controlled protein-coding genes during evolution of plants |
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| Relations |
| BioProject |
PRJNA983345 |
