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| Status |
Public on Oct 31, 2023 |
| Title |
Nat10 is involved in myocardial remodeling through ac4C-mediated transcriptomic regulation |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Background: Heart failure (HF), characterized by cardiac remodeling, is associated with abnormal epigenetic processes and aberrant gene expression. Here, we aimed to elucidate the effects and mechanisms of N-acetyltransferase 10 (NAT10)-mediated N4?acetylcytidine (ac4C) acetylation during cardiac remodeling.
Methods: NAT10 and ac4C expression were detected in both human and mouse subjects with cardiac remodeling through multiple assays. Subsequently, acetylated RNA immunoprecipitation and sequencing (acRIP-seq), thiol (SH)-linked alkylation for the metabolic sequencing of RNA (SLAM-seq), and ribosome sequencing (Ribo-seq) were employed to elucidate the role of ac4C-modified post-transcriptional regulation in cardiac remodeling. Additionally, functional experiments involving the overexpression or knockdown of NAT10 were conducted in mice models challenged with Ang II and transverse aortic constriction (TAC).
Results: NAT10 expression and RNA ac4C levels were increased in in vitro and in vivo cardiac remodeling models, as well as in patients with cardiac hypertrophy. Silencing and inhibiting NAT10 attenuated Ang II-induced cardiomyocyte hypertrophy and cardio-fibroblast activation. Next-generation sequencing revealed ac4C changes in both mice and humans with cardiac hypertrophy were associated with changes in global mRNA abundance, stability and translation efficiency. Mechanistically, NAT10 could enhance the stability and translation efficiency of CD47 and ROCK2 transcripts by upregulating their mRNA ac4C modification, thereby resulting in an increase in their protein expression during cardiac remodeling. Furthermore, the administration of Remodelin, a NAT10 inhibitor, has been shown to prevent cardiac functional impairments in mice subjected to TAC by suppressing cardiac fibrosis, hypertrophy, and inflammatory responses, while also regulating the expression levels of CD47 and ROCK2.
Conclusions: Therefore, our data suggest that modulating epitranscriptomic processes, such as ac4C acetylation through NAT10, may be a promising therapeutic target against cardiac remodeling.
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| Overall design |
We performed ac4C-seq from human heart samples (six participants per group) and four mice groups (AAV9:CONi, AAV9:NAT10i, Ang II, and Ang II +AAV9:NAT10i, with three biological repeats per group) in Model 2 by Epibiotek (Guangzhou, China). SLAM-seq was performed to measure the effect of NAT10 on mRNA half-life transcriptome-wide in NMCMs and NMCFs (two biological repeats per group) with Epi? SLAM-seq Library Prep Kit (R202208-2, Epibiotek, China) by Epibiotek (Guangzhou, China) according to the manufacturer?s instructions. Ribo-seq was performed from three mice groups (AAV9:CONi, Ang II, and Ang II +AAV9:NAT10i, with three biological repeats per group) by Epibiotek (Guangzhou, China). RNA-seq was performed from human heart samples (six biological repeats per group) and four mice groups (AAV9:Coni, AAV9:NAT10i, Ang II, And Ang II +AAV9:NAT10i, With Three Biological Repeats Per Group) in Model 2 by Epibiotek (Guangzhou, China).
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| Contributor(s) |
Yang C, Zhang J, Zhao K, Shi J |
| Citation missing |
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| Submission date |
May 30, 2023 |
| Last update date |
Nov 15, 2023 |
| Contact name |
Chuanxi Yang |
| E-mail(s) |
2205515@tongji.edu.cn
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| Organization name |
School of Medicine, Southeast University
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| Department |
Department of Cardiology
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| Street address |
300 Guangzhou Road, 210029, Nanjing, PR China
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| City |
Nanjing |
| State/province |
China |
| ZIP/Postal code |
211300 |
| Country |
China |
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| Platforms (3) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (104)
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| Relations |
| BioProject |
PRJNA977673 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233736_12hsa_acRIP-seq_input.count.txt.gz |
562.7 Kb |
(ftp)(http) |
TXT |
| GSE233736_12mmu_acRIP-seq_input.count.txt.gz |
374.8 Kb |
(ftp)(http) |
TXT |
| GSE233736_Ribo-seq_9_mouse_All.count.txt.gz |
379.8 Kb |
(ftp)(http) |
TXT |
| GSE233736_TcReadfpkm.xls.gz |
9.6 Mb |
(ftp)(http) |
XLS |
| GSE233736_mRNA-seq_9_mouse_All.count.txt.gz |
503.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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