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| Status |
Public on May 08, 2024 |
| Title |
Mucosal immune response against equine herpesvirus type 1 |
| Organism |
Equus caballus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate pre-existing mucosal immunity in equine herpesvirus type 1 (EHV-1) immune and non-immune horses during experimental viral challenge.
RNAseq was performed on nasal mucosal swab samples from immune and non-immune horses from pre (d-2), early (d1pi and d3pi), mid (d8pi and d10pi), and late (d18pi) infection.
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| Overall design |
Comparative gene expression analysis of immune and non-immune horses throughout viral challenge.
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| Contributor(s) |
Holmes CM, Babasyan S, Eady N, Schnabel CL, Wagner B |
| Citation(s) |
38742875, 39162558 |
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| Submission date |
May 19, 2023 |
| Last update date |
Oct 15, 2024 |
| Contact name |
Bettina Wagner |
| E-mail(s) |
bw73@cornell.edu
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| Organization name |
Cornell University
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| Department |
Population Medicine and Diagnostic Sciences
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| Lab |
Wagner
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| Street address |
240 Farrier Drive
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| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14815 |
| Country |
USA |
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| Platforms (1) |
| GPL21401 |
Illumina NextSeq 500 (Equus caballus) |
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| Samples (48)
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| GSM7395725 |
Horse 14, immune, d-2 |
| GSM7395726 |
Horse 15, non-immune, d-2 |
| GSM7395727 |
Horse 20, non-immune, d-2 |
| GSM7395728 |
Horse 24, immune, d-2 |
| GSM7395729 |
Horse 3, non-immune, d1pi |
| GSM7395730 |
Horse 5, non-immune, d1pi |
| GSM7395731 |
Horse 6, immune, d1pi |
| GSM7395732 |
Horse 11, immune, d1pi |
| GSM7395733 |
Horse 14, immune, d1pi |
| GSM7395734 |
Horse 15, non-immune, d1pi |
| GSM7395735 |
Horse 20, non-immune, d1pi |
| GSM7395737 |
Horse 24, immune, d1pi |
| GSM7395738 |
Horse 3, non-immune d3pi |
| GSM7395739 |
Horse 5, non-immune, d3pi |
| GSM7395740 |
Horse 6, immune, d3pi |
| GSM7395741 |
Horse 11, immune, d3pi |
| GSM7395742 |
Horse 14, immune, d3pi |
| GSM7395743 |
Horse 15, non-immune, d3pi |
| GSM7395744 |
Horse 20, non-immune, d3pi |
| GSM7395745 |
Horse 24, immune, d3pi |
| GSM7395746 |
Horse 3, non-immune d5pi |
| GSM7395747 |
Horse 5, non-immune, d5pi |
| GSM7395748 |
Horse 6, immune, d5pi |
| GSM7395749 |
Horse 11, immune, d5pi |
| GSM7395750 |
Horse 14, immune, d5pi |
| GSM7395751 |
Horse 15, non-immune, d5pi |
| GSM7395752 |
Horse 20, non-immune, d5pi |
| GSM7395753 |
Horse 24, immune, d5pi |
| GSM7395754 |
Horse 6, immune, d8pi |
| GSM7395756 |
Horse 11, immune, d8pi |
| GSM7395757 |
Horse 14, immune, d8pi |
| GSM7395758 |
Horse 20, non-immune, d8pi |
| GSM7395759 |
Horse 24, immune, d8pi |
| GSM7395760 |
Horse 3, non-immune, d10pi |
| GSM7395761 |
Horse 5, non-immune, d10pi |
| GSM7395762 |
Horse 6, immune, d10pi |
| GSM7395763 |
Horse 11, immune, d10pi |
| GSM7395764 |
Horse 14, immune, d10pi |
| GSM7395765 |
Horse 15, non-immune, d10pi |
| GSM7395766 |
Horse 20, non-immune, d10pi |
| GSM7395767 |
Horse 24, immune, d10pi |
| GSM7395768 |
Horse 6, immune, d18pi |
| GSM7395769 |
Horse 15, non-immune, d18pi |
| GSM7395770 |
Horse 20, non-immune, d18pi |
| GSM7395771 |
Horse 24, immune, d18pi |
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| Relations |
| BioProject |
PRJNA974455 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232941_EHV-1_rawCounts.txt.gz |
1.3 Kb |
(ftp)(http) |
TXT |
| GSE232941_equine_rawCounts.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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