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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 29, 2024 |
| Title |
Respiratory Syncytial virus (RSV) |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38412296 |
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| Submission date |
May 17, 2023 |
| Last update date |
May 30, 2024 |
| Contact name |
José Roberto Bermúdez-Barrientos |
| E-mail(s) |
roberto89bermudez@gmail.com, beto.bermudez@ed.ac.uk, sarah.ressel@ed.ac.uk
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| Organization name |
The University of Edinburgh
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| Department |
Institute of Immunology & Infection
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| Lab |
Buck Lab
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| Street address |
Charlotte Auerbach Rd
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| City |
Edinburgh |
| State/province |
Lothian |
| ZIP/Postal code |
EH9 3AZ |
| Country |
United Kingdom |
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| Platforms (2) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
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| Samples (44)
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| GSM7300338 |
A549 Mock-infected, 48 hpi, polyphosphatase-treated, 1 |
| GSM7300339 |
A549 RSV-infected, 48 hpi, polyphosphatase-treated, 1 |
| GSM7300340 |
A549 Mock-infected, 48 hpi, polyphosphatase-treated, 2 |
| GSM7300341 |
A549 RSV-infected, 48 hpi, polyphosphatase-treated, 2 |
| GSM7300342 |
A549 Mock-infected, 48 hpi, polyphosphatase-treated, 3 |
| GSM7300343 |
A549 RSV-infected, 48 hpi, polyphosphatase-treated, 3 |
| GSM7300391 |
A549 miR-27a shMIMIC clone 1, Mock-infected,rep 1 |
| GSM7300392 |
A549 non-targeting control (NTC) shMIMIC clone 1, Mock-infected rep 1 |
| GSM7300393 |
A549 WT, Mock-infected rep 1 |
| GSM7300394 |
A549 miR-27a shMIMIC clone 1, Mock-infected,rep 2 |
| GSM7300395 |
A549 NTC shMIMIC clone 1, Mock-infected rep 2 |
| GSM7300396 |
A549 WT, Mock-infected rep 2 |
| GSM7300397 |
A549 miR-27a shMIMIC clone 1, Mock-infected,rep 3 |
| GSM7300398 |
A549 NTC shMIMIC clone 1, Mock-infected rep 3 |
| GSM7300399 |
A549 WT, Mock-infected rep 3 |
| GSM7300400 |
A549 miR-27a & miR-27b mimic transfected, Mock-infected,rep 1 |
| GSM7300401 |
A549 miR-27a & miR-27b inhibitor transfected, Mock-infected,rep 1 |
| GSM7300402 |
A549 control mimic transfected, Mock-infected,rep 1 |
| GSM7300403 |
A549 control inhibitor transfected, Mock-infected,rep 1 |
| GSM7300404 |
A549 miR-27a & miR-27b mimic transfected, Mock-infected,rep 2 |
| GSM7300405 |
A549 miR-27a & miR-27b inhibitor transfected, Mock-infected,rep 2 |
| GSM7300406 |
A549 control mimic transfected, Mock-infected,rep 2 |
| GSM7300407 |
A549 control inhibitor transfected, Mock-infected,rep 2 |
| GSM7300408 |
A549 miR-27a & miR-27b mimic transfected, Mock-infected,rep 3 |
| GSM7300409 |
A549 miR-27a & miR-27b inhibitor transfected, Mock-infected,rep 3 |
| GSM7300410 |
A549 Mock-infected, total RNA 1 |
| GSM7300411 |
A549 Mock-infected, total RNA 2 |
| GSM7300412 |
A549 Mock-infected, total RNA 3 |
| GSM7300413 |
A549 RSV-infected, total RNA 1 |
| GSM7300414 |
A549 RSV-infected, total RNA 2 |
| GSM7300415 |
A549 RSV-infected, total RNA 3 |
| GSM7371803 |
A549_CLEAR_NCL_ DOWN |
| GSM7371804 |
A549_CLEAR_NCL_UP |
| GSM7371805 |
A549_CLEAR_400_DOWN |
| GSM7371806 |
A549_CLEAR_400_UP |
| GSM7371807 |
A549_CLEAR_200_DOWN |
| GSM7371808 |
06_Mock (A549_CLEAR_200_UP) |
| GSM7371809 |
01-RSV |
| GSM7371810 |
02-RSV |
| GSM7371811 |
04-RSV |
| GSM7371812 |
05-RSV |
| GSM7371813 |
08-mock |
| GSM7371814 |
09-mock |
| GSM7371815 |
12-RSV-IgG |
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| This SuperSeries is composed of the following SubSeries:
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| GSE231784 |
Respiratory Syncytial virus (RSV) directly binds host microRNAs and de-regulates host gene targets [miRNA-seq] |
| GSE231787 |
Respiratory Syncytial virus (RSV) directly binds host microRNAs to de-regulate host gene targets [RNA-seq miR-27 over-expression] |
| GSE231788 |
Respiratory Syncytial virus (RSV) directly binds host microRNAs and de-regulates host gene targets [RNA-seq] |
| GSE232686 |
Modified CLEAR-CLIP reveals sequestration of miRNAs by Respiratory syncytial virus and functional nuclear targets of miR-27 |
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| Relations |
| BioProject |
PRJNA973580 |
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