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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 14, 2023 |
| Title |
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
39019846 |
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| Submission date |
May 08, 2023 |
| Last update date |
Jul 19, 2024 |
| Contact name |
SONIA LAURIE |
| E-mail(s) |
sonia.laurie@gmail.com
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| Organization name |
UNC CHAPEL HILL
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| Street address |
125 Mason Farm Road
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| City |
CHAPEL HILL |
| State/province |
NC |
| ZIP/Postal code |
27514 |
| Country |
USA |
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| Platforms (5)
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| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (38)
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| GSM7307974 |
pcILC2, ATAC, rep1 |
| GSM7307975 |
pcILC2, ATAC, rep2 |
| GSM7307977 |
hILC2, ATAC, rep1 |
| GSM7307978 |
hILC2, ATAC, rep2 |
| GSM7307979 |
pc-hILC2, ATAC, rep1 |
| GSM7307980 |
pc-hILC2, ATAC, rep2 |
| GSM7308250 |
ILC2, H3K4me3, rep1 |
| GSM7308251 |
ILC2, H3K4me3, rep2 |
| GSM7308291 |
GFP+ ILC2, pre-transplant, rep1, snRNA-Seq |
| GSM7308292 |
GFP+ ILC2, pre-transplant, rep1, snATAC-Seq |
| GSM7308293 |
GFP+ ILC2, pre-transplant, rep2, snRNA-Seq |
| GSM7308294 |
GFP+ ILC2, pre-transplant, rep2, snATAC-Seq |
| GSM7308295 |
GFP+ ILC2, post-transplant, rep1, snRNA-Seq |
| GSM7308296 |
GFP+ ILC2, post-transplant, rep1, snATAC-Seq |
| GSM7308297 |
GFP+ ILC2, post-transplant, rep2, snRNA-Seq |
| GSM7308298 |
GFP+ ILC2, post-transplant, rep2, snATAC-Seq |
| GSM7308300 |
GFP+ ILC2, cytokine treated, rep1, snRNA-Seq |
| GSM7308301 |
GFP+ ILC2, cytokine treated, rep1, snATAC-Seq |
| GSM7308302 |
GFP+ ILC2, cytokine treated, rep2, snRNA-Seq |
| GSM7308303 |
GFP+ ILC2, cytokine treated, rep2, snATAC-Seq |
| GSM7308366 |
Isolated ILC2, Healthy Donor, rep1 |
| GSM7308367 |
Healthy Donor, rep1 |
| GSM7308368 |
Healthy Donor, rep2 |
| GSM7308369 |
Pre-transplant, no_future_aGVHD, rep1 |
| GSM7308370 |
Pre-transplant, no_future_aGVHD, rep2 |
| GSM7308371 |
Pre-transplant, no_future_aGVHD, rep3 |
| GSM7308372 |
Pre-transplant, future_aGVHD, rep1 |
| GSM7308373 |
Pre-transplant, future_aGVHD, rep2 |
| GSM7308374 |
Pre-transplant, future_aGVHD, rep3 |
| GSM7308375 |
Post-transplant, no_aGVHD_rep1 |
| GSM7308376 |
Post-transplant, no_aGVHD_rep2 |
| GSM7308377 |
Post-transplant, no_aGVHD_rep3 |
| GSM7308378 |
Post-transplant, aGVHD, rep1 |
| GSM7308380 |
Post-transplant, aGVHD, rep2 |
| GSM7308381 |
Post-transplant, aGVHD, rep3 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE231999 |
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [ATAC-Seq] |
| GSE232000 |
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [ChIP-Seq] |
| GSE232001 |
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [10X Multiome] |
| GSE232002 |
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [scATAC-Seq] |
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| Relations |
| BioProject |
PRJNA970384 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232003_RAW.tar |
14.6 Gb |
(http)(custom) |
TAR (of BED, BW, CSV, H5, NARROWPEAK, TBI, TSV) |
SRA Run Selector |
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