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| Status |
Public on Mar 04, 2024 |
| Title |
Predisposal of Interferon Regulatory Factor 1 Deficiency to Accumulate DNA Damage and Promote Osteoarthritis Development in Cartilage [ATAC-seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To investigate the mechanisms of IRF1 in the development of OA, we characterized regulatory elements accessible to IRF1 via DNA footprinting analysis in chondrocytes by employing the assay for transposase-accessible chromatin with sequencing (ATAC-seq).
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| |
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| Overall design |
ATAC sequencing data using samples from primary mouse articular chondrocytes
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| |
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| Contributor(s) |
Cho Y, Kim H, Yook G, Kim J |
| Citation(s) |
38268484 |
| |
| Submission date |
Apr 27, 2023 |
| Last update date |
Mar 04, 2024 |
| Contact name |
Jin-Hong Kim |
| E-mail(s) |
snumrl301@gmail.com
|
| Organization name |
Seoul National University
|
| Street address |
1 Gwanak-ro, Gwanak-gu
|
| City |
Seoul |
| ZIP/Postal code |
08826 |
| Country |
South Korea |
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| Platforms (1) |
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| Samples (3) |
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| This SubSeries is part of SuperSeries: |
| GSE230801 |
Predisposal of Interferon Regulatory Factor 1 Deficiency to Accumulate DNA Damage and Promote Osteoarthritis Development in Cartilage |
|
| Relations |
| BioProject |
PRJNA962582 |
