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Series GSE229940 Query DataSets for GSE229940
Status Public on Feb 19, 2024
Title Radiotherapy induces persistent innate immune reprogramming of microglia into a priming state
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary More than half of all brain tumour survivors experience debilitating and often progressive cognitive decline after treatment with radiotherapy. Microglia, the tissue-resident macrophages of the brain, have been implicated in this decline. In response to various insults microglia can develop innate immune memory (IMM), which can either enhance (priming) or repress (tolerance) the response to subsequent inflammatory challenges. Here, we investigated whether radiation can affect the IMM of microglia by irradiating the brains of rats and later exposing them to a second inflammatory challenge. Transcriptomic profiling of microglia isolated from irradiated rats showed a stronger immune response to a second inflammatory insult demonstrating that radiation can lead to long-lasting molecular reprogramming of microglia. Transcriptomic analysis of post-mortem non-tumour brain tissue of glioblastoma patients indicates that radiation-induced microglial priming is conserved in humans. Targeting microglial priming after radiotherapy or avoiding further inflammatory insults could decrease progressive radiotherapy-induced cognitive decline.
 
Overall design Bulk RNA sequencing analysis of FACS-isolated microglia from the whole brains of rats (sham-)irradiated with 14 Gy X-rays with following i.p. injection of PBS vehicle or lipopolysaccharide (LPS) 6 weeks later . N = 4 per condition.
 
Contributor(s) Voshart DC, Oshima T, Jiang Y, van der Linden GP, Ainslie AP, Reali Nazario L, van Buuren-Broek F, Scholma AC, van Weering HR, Brouwer N, Sewdihal J, Brouwer U, Coppes RP, Holtman IR, Eggen BJ, Kooistra SM, Barazzuol L
Citation(s) 38358885
Submission date Apr 18, 2023
Last update date May 20, 2024
Contact name Takuya Oshima
E-mail(s) t.oshima@umcg.nl
Organization name University Medical Center Groningen
Department Department of Biomedical Sciences of Cells & Systems
Lab Section Molecular Neurobiology
Street address Antonius Deusinglaan 1
City Groningen
State/province Groningen
ZIP/Postal code 9713AV
Country Netherlands
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (16)
GSM7181574 Control_PBS_1
GSM7181575 Control_LPS_1
GSM7181576 Radiation_PBS_1
Relations
BioProject PRJNA956850

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE229940_RAW.tar 3.5 Mb (http)(custom) TAR (of TXT)
GSE229940_countmtx.csv.gz 475.0 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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