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| Status |
Public on Jun 02, 2023 |
| Title |
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.nature.com/articles/s41590-023-01522-0
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| Citation(s) |
37291385 |
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| Submission date |
Apr 11, 2023 |
| Last update date |
Sep 01, 2023 |
| Contact name |
Katerina akassoglou |
| E-mail(s) |
katerina.akassoglou@gladstone.ucsf.edu
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| Organization name |
Gladstone Institutes
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| Street address |
1650 Owens st
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| City |
San Francisco, CA |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platforms (2) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (63)
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| GSM7159374 |
5xFAD, 12m, CD11bpositive, ROSnegative, male, rep1 |
| GSM7159375 |
5xFAD, 12m, CD11bpositive, ROSpositive, male, rep1 |
| GSM7159376 |
5xFAD, 12m, CD11bpositive, ROSnegative, male, rep2 |
| GSM7159377 |
5xFAD, 12m, CD11bpositive, ROSpositive, male, rep2 |
| GSM7159378 |
5xFAD, 12m, CD11bpositive, ROSnegative, female, rep3 |
| GSM7159379 |
5xFAD, 12m, CD11bpositive, ROSpositive, female, rep3 |
| GSM7159380 |
NTG, 12m, CD11bpositive, ROSnegative, female, rep1 |
| GSM7159381 |
NTG, 12m, CD11bpositive, ROSpositive, female, rep1 |
| GSM7159382 |
NTG, 12m, CD11bpositive, ROSnegative, male, rep2 |
| GSM7159383 |
NTG, 12m, CD11bpositive, ROSpositive, male, rep2 |
| GSM7159384 |
NTG, 12m, CD11bpositive, ROSnegative, male, rep3 |
| GSM7159385 |
NTG, 12m, CD11bpositive, ROSpositive, male, rep3 |
| GSM7159386 |
5XFAD, Fgg390-396A, CD11b, F, 6m, scRNAseq, rep1 |
| GSM7159387 |
5XFAD, Fgg390-396A, CD11b, F, 6m, scRNAseq, rep2 |
| GSM7159388 |
5XFAD, Fgg390-396A, CD11b, M, 6m, scRNAseq, rep3 |
| GSM7159389 |
5XFAD, Fgg390-396A, CD11b, M, 6m, scRNAseq, rep4 |
| GSM7159390 |
Fgg390-396A, CD11b, M, 6m, scRNAseq, rep1 |
| GSM7159391 |
Fgg390-396A, CD11b, M, 6m, scRNAseq, rep2 |
| GSM7159392 |
Fgg390-396A, CD11b, F, 6m, scRNAseq, rep3 |
| GSM7159393 |
Fgg390-396A, CD11b, F, 6m, scRNAseq, rep4 |
| GSM7159394 |
5XFAD, CD11b, F, 6m, scRNAseq, rep1 |
| GSM7159395 |
5XFAD, CD11b, M, 6m, scRNAseq, rep2 |
| GSM7159396 |
5XFAD, CD11b, M, 6m, scRNAseq, rep3 |
| GSM7159397 |
NTG, CD11b, F, 6m, scRNAseq, rep1 |
| GSM7159398 |
NTG, CD11b, M, 6m, scRNAseq, rep2 |
| GSM7159399 |
NTG, CD11b, M, 6m, scRNAseq, rep3 |
| GSM7159404 |
RNAseq_AlbKO_Mg_R1 |
| GSM7159405 |
RNAseq_AlbKO_Mg_R2 |
| GSM7159406 |
RNAseq_AlbKO_Mg_R3 |
| GSM7159407 |
RNAseq_AlbKO_Mg_R4 |
| GSM7159408 |
RNAseq_C3KO_Mg_R1 |
| GSM7159409 |
RNAseq_C3KO_Mg_R2 |
| GSM7159410 |
RNAseq_C3KO_Mg_R3 |
| GSM7159411 |
RNAseq_C3KO_Mg_R4 |
| GSM7159412 |
RNAseq_FGNKO_Mg_R1 |
| GSM7159413 |
RNAseq_FGNKO_Mg_R2 |
| GSM7159414 |
RNAseq_FGNKO_Mg_R3 |
| GSM7159415 |
RNAseq_Fgg390-396A_Mg_R1 |
| GSM7159416 |
RNAseq_Fgg390-396A_Mg_R2 |
| GSM7159417 |
RNAseq_Fgg390-396A_Mg_R3 |
| GSM7159418 |
RNAseq_WT_Mg_R1 |
| GSM7159419 |
RNAseq_WT_Mg_R2 |
| GSM7159420 |
RNAseq_WT_Mg_R3 |
| GSM7159421 |
RNAseq_aCSF_Mg_R1 |
| GSM7159422 |
RNAseq_aCSF_Mg_R2 |
| GSM7159423 |
RNAseq_aCSF_Mg_R3 |
| GSM7170017 |
BMDM_unstim_batch1_scRNAseq_rep1 |
| GSM7170018 |
BMDM_unstim_batch1_scRNAseq_rep2 |
| GSM7170019 |
BMDM_LPS_batch1_scRNAseq_rep1 |
| GSM7170020 |
BMDM_LPS_batch1_scRNAseq_rep2 |
| GSM7170021 |
BMDM_iC3b_batch1_scRNAseq_rep1 |
| GSM7170022 |
BMDM_fibrin_batch1_scRNAseq_rep1 |
| GSM7170023 |
BMDM_fibrin_batch2_scRNAseq_rep2 |
| GSM7170024 |
BMDM_fibrin_batch2_scRNAseq_rep3 |
| GSM7170025 |
BMDM_unstim_batch2_scRNAseq_rep3 |
| GSM7170026 |
BMDM_unstim_batch2_scRNAseq_rep4 |
| GSM7170027 |
Microglia_unstim_scRNAseq_rep1 |
| GSM7170028 |
Microglia_LPS_scRNAseq_rep1 |
| GSM7170029 |
Microglia_LPS_scRNAseq_rep2 |
| GSM7170030 |
Microglia_Fibrin_scRNAseq_rep1 |
| GSM7170031 |
Microglia_Fibrin_scRNAseq_rep2 |
| GSM7170032 |
Microglia_iC3b_scRNAseq_rep1 |
| GSM7170033 |
Microglia_iC3b_scRNAseq_rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE229372 |
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling [5XFAD Toxseq] |
| GSE229373 |
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling [scRNAseq] |
| GSE229375 |
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling [plasma RNAseq] |
| GSE229655 |
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling [scRNA-Seq II] |
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| Relations |
| BioProject |
PRJNA954299 |
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