NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE228629 Query DataSets for GSE228629
Status Public on Jan 16, 2024
Title Spreading of inflammation: the skin-joint axis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary The spread of inflammation from the skin to the joints is a key issue in the pathogenesis of psoriatic arthritis (PsA). Psoriasis (PsO), one of the most common skin diseases, usually precedes joint manifestations, suggesting skin-joint disease spread, which occurs in about 30% of psoriasis patients. Until now, it has been unclear why the inflammatory process remains restricted to the skin in some patients with PsO, whereas it spreads to tendons and joints in others. Using a preclinical model of PsA, we aimed to elucidate the skin-joint axis, i.e. the spread of psoriatic inflammation from the skin to the joints. KAEDE transgenic mice expressing a photo-convertible fluorescent reporter were used to assess cell trafficking from inflamed skin to other organs in the mouse model of IL-23 overexpression (IL-23OE) induced PsA. Psoriatic skin lesions were irradiated with UV light to induce the photoswitch from KAEDE-GREEN to KAEDE-RED. Migrating cells were characterised by scRNAseq.
 
Overall design Stromal and immune cells from synovial joints and skin were isolated by fluorescence-activated cell sorting from minicircle-induced IL-23 overexpression on day 7. Two libraries were generated corresponding to either Balb/c or C67BL/6 background. Viable CD45+ Ly6G- and viable CD45- were isolated and labelled with hashtag antibodies against CD45 and B2m.
Please note that processed data genated from both GEX and HTO are linked to the corresponding *GEX sample records.
 
Contributor(s) Raimondo MG, Mohammadian H, Rauber S, Labinsky H, Rius Rigau A, Ramming A
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 31, 2023
Last update date Jan 17, 2024
Contact name Simon Rauber
Organization name Friedrich-Alexander-University Erlangen-Nürnberg
Department Medicine 3
Street address Ulmenweg 18
City Erlangen
ZIP/Postal code 91054
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM7134137 Il23mc induced arthritis, synovial and skin cells B6 background GEX
GSM7134138 Il23mc induced arthritis, synovial and skin cells B6 background HTO
GSM7134139 Il23mc induced arthritis, synovial and skin cells Balb/c background GEX
Relations
BioProject PRJNA950891

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228629_RAW.tar 179.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap