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GEO accession:
Series GSE228565
Query DataSets for GSE228565
Status
Public on Feb 15, 2024
Title
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38328795
Submission date
Mar 30, 2023
Last update date
Feb 16, 2024
Contact name
Pedro J Batista
E-mail(s)
pedro.batista@nih.gov
Phone
3014356294
Organization name
National Institutes of Health
Department
National Cancer Institute
Lab
Cell Biology
Street address
37 Convent Street Bldg 37
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platforms (6)
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GPL15520
Illumina MiSeq (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21290
Illumina HiSeq 3000 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (75)
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GSM7123401
Run 1 UOK262 Parent RNA-seq--Replicate 1
GSM7123402
Run 1 UOK262 Parent RNA-seq--Replicate 2
GSM7123403
Run 1 UOK262 Parent RNA-seq--Replicate 3
GSM7123404
Run 1 UOK262 Mutant RNA-seq--Replicate 1
GSM7123405
Run 1 UOK262 Mutant RNA-seq--Replicate 2
GSM7123406
Run 1 UOK262 Mutant RNA-seq--Replicate 3
GSM7123407
Run 1 UOK262 WT RNA-seq--Replicate 1
GSM7123408
Run 1 UOK262 WT RNA-seq--Replicate 2
GSM7123409
Run 1 UOK262 WT RNA-seq--Replicate 3
GSM7124030
7_NCA_S7_R1
GSM7124031
8_NCB_S8_R1
GSM7124032
9_NCC_S9_R1
GSM7124033
10_NWA_S10_R1
GSM7124034
11_NWB_S11_R1
GSM7124035
12_NWC_S12_R1
GSM7124036
WT Run 1 input replicate 1
GSM7124037
WT Run 1 input replicate 2
GSM7124038
WT Run 1 input replicate 3
GSM7124039
Mutant Run 1 input replicate 1
GSM7124040
Mutant Run 1 input replicate 2
GSM7124041
Mutant Run 1 input replicate 3
GSM7124042
WT Run 1 IP replicate 1
GSM7124043
WT Run 1 IP replicate 2
GSM7124044
WT Run 1 IP replicate 3
GSM7124045
Mutant Run 1 IP replicate 1
GSM7124046
Mutant Run 1 IP replicate 2
GSM7124047
Mutant Run 1 IP replicate 3
GSM7124048
Mut 0hr replicate 1
GSM7124049
Mut 0hr replicate 2
GSM7124050
Mut 0hr replicate 3
GSM7124051
Mut 6 hr replicate 1
GSM7124052
Mut 6 hr replicate 2
GSM7124053
Mut 6 hr replicate 3
GSM7124054
Mut 12 hr replicate 1
GSM7124055
Mut 12 hr replicate 2
GSM7124056
Mut 12 hr replicate 3
GSM7124057
Mut omit replicate 1
GSM7124058
Mut omit replicate 2
GSM7124059
Mut omit replicate 3
GSM7124060
WT 0 hr replicate 1
GSM7124061
WT 0 hr replicate 2
GSM7124062
WT 0 hr replicate 3
GSM7124063
WT 6 hr replicate 1
GSM7124064
WT 6 hr replicate 2
GSM7124065
WT 6 hr replicate 3
GSM7124066
WT 12 hr replicate 1
GSM7124067
WT 12 hr replicate 2
GSM7124068
WT 12 hr replicate 3
GSM7124069
WT omit replicate 1
GSM7124070
WT omit replicate 2
GSM7124071
WT omit replicate 3
GSM7124082
Run 1 mutant input replicate 1
GSM7124083
Run 1 mutant input replicate 2
GSM7124084
Run 1 mutant input replicate 3
GSM7124085
Run 1 mutant RPF replicate 1
GSM7124086
Run 1 mutant RPF replicate 2
GSM7124087
Run 1 mutant RPF replicate 3
GSM7124088
Run 1 WT input replicate 1
GSM7124089
Run 1 WT input replicate 2
GSM7124090
Run 1 WT input replicate 3
GSM7124091
Run 1 WT RFP replicate 1
GSM7124092
Run 1 WT RFP replicate 2
GSM7124093
Run 1 WT RFP replicate 3
GSM7124101
28S WT Sample 1
GSM7124102
28S WT Sample 2
GSM7124103
28S WT Sample 3
GSM7124104
28S Mutant Sample 1
GSM7124105
28S Mutant Sample 2
GSM7124106
28S Mutant Sample 3
GSM7124107
ND5 WT Sample 1
GSM7124108
ND5 WT Sample 2
GSM7124109
ND5 WT Sample 3
GSM7124110
ND5 Mutant Sample 1
GSM7124111
ND5 Mutant Sample 2
GSM7124112
ND5 Mutant Sample 3
This SuperSeries is composed of the following SubSeries:
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GSE228525
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [RNA-Seq]
GSE228557
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [miRNA-seq]
GSE228558
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [m6A-IP]
GSE228559
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [SLAM-seq]
GSE228561
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [Ribosome_Profiling]
GSE228563
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma [m1A_pileup]
Relations
BioProject
PRJNA950364
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE228565_RAW.tar
19.3 Mb
(http)
(custom)
TAR (of CSV, TAB, TXT)
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