|
| Status |
Public on Apr 01, 2024 |
| Title |
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Mar 27, 2023 |
| Last update date |
Jun 21, 2024 |
| Contact name |
Xiaoyang Zhang |
| E-mail(s) |
xiaoyang.zhang@hci.utah.edu
|
| Organization name |
University of Utah
|
| Department |
Oncological Sciences
|
| Lab |
Zhang
|
| Street address |
1950 Circle of Hope Drive
|
| City |
Salt Lake City |
| State/province |
Utah |
| ZIP/Postal code |
84112 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (34)
|
|
| This SuperSeries is composed of the following SubSeries: |
| GSE228166 |
3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [ChIP-Seq] |
| GSE228246 |
3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [HiChIP] |
| GSE247056 |
3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [RNA-Seq] |
|
| Relations |
| BioProject |
PRJNA949123 |
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