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Series GSE227326 Query DataSets for GSE227326
Status Public on Sep 29, 2023
Title Microenvironment-dependent growth of Sezary cells in humanized IL-15 mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Sezary syndrome (SS) is a rare, aggressive leukemic variant of cutaneous T cell lymphoma (CTCL) that lacks adequate therapeutic options and representative small animal models. Here we demonstrate that IL-15 is a critical CTCL growth and survival factor. Importantly, a genetically engineered immunodeficient mouse model expressing human IL-15 uniquely supported the growth of patient derived Sezary cells relative to conventional immunodeficient mouse strains. Patient derived xenograft (PDX) SS models recapacitated the pathologic features of the human disease, including skin infiltration and spread of leukemic cells to the periphery, and maintained the dependence on human IL-15 upon serial in vivo passaging. Detailed molecular characterization of the engrafted cells by single cell transcriptome analysis revealed tissue specific regulation of gene expression and distinct clonal engraftment patterns. Overall, we document an important dependence of Sezary cell survival and proliferation on IL-15 signaling and the utility of the humanized IL-15, immunodeficient mice for SS PDX model generation. Furthermore, these studies advocate for the thorough molecular understanding of the resultant PDX models to maximize their translational impact.
 
Overall design Data inludes 7 Sezary patient-derived xenograft (PDX) P3 mice samples. 4 come from spleen and 3 come from skin. These are SRG15 mice modeling humanization of IL15 allele on an SRG immunodeficient background. Samples were enriched for CD4+ cells and subjected to single cell RNA-seq.
 
Contributor(s) Gao J, Ren S, Choonoo G, Frleta D, Zhong J, Gupta N, Atwal M, Macdonald L, Murphy A, Kuhnert F
Citation(s) 37718909
Submission date Mar 14, 2023
Last update date Oct 31, 2023
Contact name Gabrielle Choonoo
Organization name Regeneron Pharmaceuticals, Inc
Street address 777 Old Saw Mill River Rd
City Tarrytown
State/province NY
ZIP/Postal code 10591
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (14)
GSM7097795 PDX-skin-1 [GEX]
GSM7097796 PDX-skin-1 [TCR]
GSM7097797 PDX-skin-2 [GEX]
Relations
BioProject PRJNA944661

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227326_Sezary_Seurat_Clustering_Data.RData.gz 329.2 Mb (ftp)(http) RDATA
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Raw data are available in SRA
Processed data are available on Series record

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