NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE227098 Query DataSets for GSE227098
Status Public on Jul 09, 2024
Title IL-21 induces antitumor response in NK cells via CEBPD
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary NK cells engineered to express IL-21 (IL-21 NK) acquire strong antitumor activity, with the ability to respond to glioblastoma (GBM) rechallenge in vitro and in vivo. IL-21 NK cells have a unique signature of chromatin accessibility, with CCAAT/Enhancer-Binding Protein (C/EBP), especially CEBPD, serving as key transcription factors regulating their memory response.
 
Overall design The objective of this study was to investigate the epigenetic factors that contributing for memory formation in NK cells
 
Contributor(s) Shanley M, Rezvani K
Citation(s) 39137729, 40027823
Submission date Mar 10, 2023
Last update date Mar 14, 2025
Contact name Katayoun Rezvani
E-mail(s) krezvani@mdanderson.org
Organization name The University of Texas MD Anderson Cancer Center
Street address 1515 Holcombe Blvd
City HOUSTON
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (60)
GSM7091591 IL15 CBNK GBM Day 3 coculture 124610 ATAC
GSM7091592 IL21 CBNK GBM Day 3 coculture 124610 ATAC
GSM7091593 IL15 CBNK day 7  124610 (baseline) ATAC
Relations
BioProject PRJNA943227

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227098_RAW.tar 6.4 Gb (http)(custom) TAR (of TBI, TSV)
GSE227098_SC122_scRNA_pySCENIC_auc_matrix.csv.gz 30.0 Mb (ftp)(http) CSV
GSE227098_atac_IL21_15.19Nov.2023.RDS.gz 1.7 Gb (ftp)(http) RDS
GSE227098_atac_IL21_15.RDS.gz 1.7 Gb (ftp)(http) RDS
GSE227098_bulkATAC_rawCount.csv.gz 16.9 Mb (ftp)(http) CSV
GSE227098_bulkRNA_rawCount.csv.gz 1.5 Mb (ftp)(http) CSV
GSE227098_rna_IL21_15.RDS.gz 870.6 Mb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap