|
| Status |
Public on Jun 26, 2023 |
| Title |
Hnf4 controls gut and liver gene programs in the thymus [CUT&RUN] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We profiled medullary thymic epithelial cells by CUT&RUN to investigate mechanisms of T-cell tolerance.
|
| |
|
| Overall design |
CUT&RUN of mTECs
|
| |
|
| Contributor(s) |
Michelson DA, Lee J, Benoist C, Mathis D |
| Citation missing |
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| |
| Submission date |
Feb 20, 2023 |
| Last update date |
Jun 29, 2023 |
| Contact name |
CBDM Lab |
| E-mail(s) |
cbdm@hms.harvard.edu
|
| Phone |
617-432-7747
|
| Organization name |
Harvard Medical School
|
| Department |
Microbiology and Immunobiology
|
| Lab |
CBDM
|
| Street address |
77 Avenue Louis Pasteur
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (32)
|
|
| This SubSeries is part of SuperSeries: |
| GSE225661 |
Hnf4 controls gut and liver gene programs in the thymus |
|
| Relations |
| BioProject |
PRJNA936891 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE225657_Hnf4_CTCF.merged.CPM.bigwig |
67.8 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H33.merged.CPM.bigwig |
69.8 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H3K27ac.merged.CPM.bigwig |
66.7 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H3K27me3.merged.CPM.bigwig |
117.0 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H3K36me3.merged.CPM.bigwig |
100.9 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H3K4me1.merged.CPM.bigwig |
34.2 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_H3K4me3.merged.CPM.bigwig |
62.2 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_Hnf4_IgG.merged.CPM.bigwig |
45.6 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_RAW.tar |
1.9 Gb |
(http)(custom) |
TAR (of BW) |
| GSE225657_WT_CTCF.merged.CPM.bigwig |
63.3 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H33.merged.CPM.bigwig |
47.6 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H3K27ac.merged.CPM.bigwig |
67.5 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H3K27me3.merged.CPM.bigwig |
111.7 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H3K36me3.merged.CPM.bigwig |
59.4 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H3K4me1.merged.CPM.bigwig |
56.2 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_H3K4me3.merged.CPM.bigwig |
70.4 Mb |
(ftp)(http) |
BIGWIG |
| GSE225657_WT_IgG.merged.CPM.bigwig |
55.6 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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