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| Status |
Public on Apr 10, 2024 |
| Title |
ChIP-seq for OsINO80 location using YFP antibody, and ChIP-seq for WT and osino80 using H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 antibodies |
| Organism |
Oryza sativa Japonica Group |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To investigate the effect of the OsINO80, we analysed OsINO80 binding regions and analysed genome-wide H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 in the mutant and WT by ChIP-seq.
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| Overall design |
ChIP-seq for OsINO80 location using YFP antibody, and ChIP-seq for WT and osino80 using H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 antibodies.
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| Contributor(s) |
Dong A, Wang J, Li X, Xie W, Yin L, Du K, Wu J |
| Citation(s) |
39738209 |
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| Submission date |
Feb 16, 2023 |
| Last update date |
Feb 05, 2025 |
| Contact name |
Wenhao Xie |
| E-mail(s) |
20210700089@fudan.edu.cn
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| Phone |
18005879367
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| Organization name |
Fudan University
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| Department |
School of Life Science
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| Street address |
No. 2005, Songhu Road
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| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
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| Platforms (2) |
| GPL13834 |
Illumina HiSeq 2000 (Oryza sativa Japonica Group) |
| GPL27860 |
Illumina NovaSeq 6000 (Oryza sativa Japonica Group) |
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| Samples (61)
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| GSM8189832 |
osino80_H2AZ_rep1, ChIP-seq |
| GSM8189833 |
osino80_H2AZ_rep2, ChIP-seq |
| GSM8189834 |
osino80_H3K27me3_rep1, ChIP-seq |
| GSM8189835 |
osino80_H3K27me3_rep2, ChIP-seq |
| GSM8189836 |
osino80_H3K27me3_rep3, ChIP-seq |
| GSM8189837 |
osino80_H3K36me3_rep1, ChIP-seq |
| GSM8189838 |
osino80_H3K36me3_rep2, ChIP-seq |
| GSM8189839 |
osino80_H3K4me2_rep1, ChIP-seq |
| GSM8189840 |
osino80_H3K4me2_rep2, ChIP-seq |
| GSM8189841 |
osino80_H3K4me3_rep1, ChIP-seq |
| GSM8189842 |
osino80_H3K4me3_rep2, ChIP-seq |
| GSM8189843 |
osino80_H3K9me2_rep1, ChIP-seq |
| GSM8189844 |
osino80_H3K9me2_rep2, ChIP-seq |
| GSM8189845 |
osino80_H3K9me2_rep3, ChIP-seq |
| GSM8189846 |
osino80_H3_rep1, ChIP-seq |
| GSM8189847 |
osino80_H3_rep2, ChIP-seq |
| GSM8189848 |
osino80_input_rep1, ChIP-seq |
| GSM8189849 |
osino80_input_rep2, ChIP-seq |
| GSM8189850 |
osino80_input_rep3, ChIP-seq |
| GSM8189851 |
osino80_input_rep4, ChIP-seq |
| GSM8189852 |
OsINO80-YFP_input_rep1, ChIP-seq |
| GSM8189853 |
OsINO80-YFP_input_rep2, ChIP-seq |
| GSM8189854 |
OsINO80-YFP_YFP_rep1, ChIP-seq |
| GSM8189855 |
OsINO80-YFP_YFP_rep2, ChIP-seq |
| GSM8189856 |
WT_H2A, ChIP-seq |
| GSM8189857 |
WT_H2Aub_rep1, ChIP-seq |
| GSM8189858 |
WT_H2Aub_rep2, ChIP-seq |
| GSM8189859 |
WT_H2AZ_rep1, ChIP-seq |
| GSM8189860 |
WT_H2AZ_rep2, ChIP-seq |
| GSM8189861 |
WT_H3K27me3_rep1, ChIP-seq |
| GSM8189862 |
WT_H3K27me3_rep2, ChIP-seq |
| GSM8189863 |
WT_H3K27me3_rep3, ChIP-seq |
| GSM8189864 |
WT_H3K36me3_rep1, ChIP-seq |
| GSM8189865 |
WT_H3K36me3_rep2, ChIP-seq |
| GSM8189866 |
WT_H3K4me2_rep1, ChIP-seq |
| GSM8189867 |
WT_H3K4me2_rep2, ChIP-seq |
| GSM8189868 |
WT_H3K4me3_rep1, ChIP-seq |
| GSM8189869 |
WT_H3K4me3_rep2, ChIP-seq |
| GSM8189870 |
WT_H3K9me2_rep1, ChIP-seq |
| GSM8189871 |
WT_H3K9me2_rep2, ChIP-seq |
| GSM8189872 |
WT_H3K9me2_rep3, ChIP-seq |
| GSM8189873 |
WT_H3_rep1, ChIP-seq |
| GSM8189874 |
WT_H3_rep2, ChIP-seq |
| GSM8189875 |
WT_input_for_YFP_rep1, ChIP-seq |
| GSM8189876 |
WT_input_for_YFP_rep2, ChIP-seq |
| GSM8189877 |
WT_input_rep1, ChIP-seq |
| GSM8189878 |
WT_input_rep2, ChIP-seq |
| GSM8189879 |
WT_input_rep3, ChIP-seq |
| GSM8189880 |
WT_input_rep4, ChIP-seq |
| GSM8189881 |
WT_YFP_rep1, ChIP-seq |
| GSM8189882 |
WT_YFP_rep2, ChIP-seq |
| GSM8189883 |
YFP_input_rep1, ChIP-seq |
| GSM8189884 |
YFP_input_rep2, ChIP-seq |
| GSM8189885 |
YFP_input_rep3, ChIP-seq |
| GSM8189886 |
YFP_YFP_rep1, ChIP-seq |
| GSM8189887 |
YFP_YFP_rep2, ChIP-seq |
| GSM8189888 |
YFP_YFP_rep3, ChIP-seq |
| GSM8189889 |
YFP_YFP_rep4, ChIP-seq |
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| This SubSeries is part of SuperSeries: |
| GSE263341 |
ChIP-seq, RNA-seq and BS-seq for WT and osino80 |
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| Relations |
| BioProject |
PRJNA935781 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE225484_RAW.tar |
4.7 Gb |
(http)(custom) |
TAR (of BIGWIG) |
SRA Run Selector |
| Raw data are available in SRA |
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