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Series GSE225063 Query DataSets for GSE225063
Status Public on Aug 11, 2024
Title Blockade of LAG-3 and PD-1 leads to co-expression of cytotoxic and exhaustion gene modules in CD8+ T cells to promote antitumor immunity
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Relatlimab (rela; anti-LAG-3) plus nivolumab (nivo; anti-PD-1) is safe and effective for treatment of advanced melanoma. We designed a trial (NCT03743766) where advanced melanoma patients received rela, nivo, or rela+nivo to interrogate the immunologic mechanisms of rela+nivo. Analysis of biospecimens from this ongoing trial demonstrated that rela+nivo led to enhanced capacity for CD8+ T cell receptor signaling and altered CD8+ T cell differentiation, leading to heightened cytotoxicity despite the retention of an exhaustion profile. Co-expression of cytotoxic and exhaustion signatures was driven by PRDM1, BATF, ETV7, and TOX. Effector function was upregulated in clonally expanded CD8+ T cells that emerged after rela+nivo. A rela+nivo intratumoral CD8+ T cell signature was associated with a favorable prognosis. This intratumoral rela+nivo signature was validated in peripheral blood as an elevated frequency of CD38+TIM3+CD8+ T cells. Overall, we demonstrated that cytotoxicity can be enhanced despite the retention of exhaustion signatures, which will inform future therapeutic strategies.

 
Overall design Peripheral blood and tumor biopsies were collected from patients with advanced melanoma prior to and 4 weeks following treatment with either relatlimab (anti-LAG3) alone, nivolumab (anti-PD1) alone, or the combination of relalimab+nivolumab. Follow-up blood and tumor specimens were collected when available at either 12 or 16 weeks post-treatment.
Web link https://pubmed.ncbi.nlm.nih.gov/39121849/
 
Contributor(s) Cillo AR, Kirkwood JM, Bruno TC, Vignali DA
Citation(s) 39121849
Submission date Feb 10, 2023
Last update date Nov 09, 2024
Contact name Anthony Richard Cillo
E-mail(s) arc85@pitt.edu
Organization name University of Pittsburgh
Department Immunology
Street address The Assembly, Room 4070C Bay 10, 5051 Centre Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (256)
GSM7038604 Patient_10_Baseline_PBMC_GEX
GSM7038605 Patient_10_Baseline_PBMC_TCR
GSM7038606 Patient_10_Week16_PBMC_GEX
Relations
BioProject PRJNA933637

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225063_18071_cd8_analysis_object_231127.rds.gz 454.9 Mb (ftp)(http) RDS
GSE225063_HTO_details_README_updated_241015.txt 2.6 Kb (ftp)(http) TXT
GSE225063_HTO_details_README_updated_241024.xlsx 11.7 Kb (ftp)(http) XLSX
GSE225063_RAW.tar 1.9 Gb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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