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Series GSE224836 Query DataSets for GSE224836
Status Public on Jun 15, 2023
Title The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
Abstract:
N6-methyladenosine (m6A), the most abundant mRNA modification, is deposited in mammals/insects/plants by m6A methyltransferase complexes (MTC) comprising a catalytic subunit and at least five additional proteins. The yeast MTC is critical for meiosis and was known to comprise three proteins, of which two were conserved. We uncover three novel MTC components (Kar4/Ygl036w-Vir1/Dyn2). All MTC subunits, except for Dyn2, are essential for m6A deposition and have corresponding mammalian MTC orthologs. Unlike the mammalian bipartite MTC, the yeast MTC is unipartite, yet multifunctional. The mRNA interacting module, comprising Ime4, Mum2, Vir1, and Kar4, exerts the MTC m6A-independent function, while Slz1 enables the MTC catalytic function in m6A deposition. Both functions are critical for meiotic progression. Kar4 also has a mechanistically separate role from the MTC during mating. The yeast MTC constituents play distinguishable m6A-dependent, MTC-dependent and MTC-independent functions, highlighting their complexity and paving the path towards dissecting multi-layered MTC functions in mammals.
 
Overall design Refer to individual Series
 
Citation(s) 37490041
Submission date Feb 08, 2023
Last update date Oct 09, 2023
Contact name Alexander Maman
E-mail(s) alex.a.maman@gmail.com
Organization name Weizmann Institute of Science
Department Molecular Genetics
Lab Schwartz Lab
Street address Herzl St 234
City Rehovot
ZIP/Postal code 7610001
Country Israel
 
Platforms (2)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
GPL27812 Illumina NovaSeq 6000 (Saccharomyces cerevisiae)
Samples (215)
GSM7033752 A_strain_10296_0_A
GSM7033753 A_strain_10296_0_B
GSM7033754 A_strain_10296_2_A
This SuperSeries is composed of the following SubSeries:
GSE224833 The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [RNA-Seq]
GSE224835 The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [m6A-Seq]
Relations
BioProject PRJNA932762

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224836_RAW.tar 853.2 Mb (http)(custom) TAR (of RDS)
SRA Run SelectorHelp

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