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Series GSE22478 Query DataSets for GSE22478
Status Public on Sep 01, 2010
Title PHF8 mediates histone demethylation events in cell cycle progression [ChIP-Seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary While reversible histone modifications are linked to an ever-expanding range of biological functions, the demethylases for histone H4 lysine 20 and their potential regulatory roles remain unknown. Here, we report that the PHD and Jumonji C (JmjC) domain-containing protein, PHF8, while utilizing multiple substrates, including H3K9me1/2 and H3K27me2, also functions as an H4K20me1 demethylase. PHF8 is recruited to promoters by its PHD domain based on interaction with H3K4me2/3 and controls G1/S transition in conjunction with E2F1, HCF-1 and Set1A, at least in part, by removing the repressive H4K20me1 mark from a subset of E2F1-regulated gene promoters. Phosphorylation-dependent PHF8 dismissal from chromatin in prophase is apparently required for the accumulation of H4K20me1 during early mitosis, which might represent a component of the Condensin II loading process. Accordingly, the HEAT repeat clusters in two non-SMC Condensin II subunits, N-CAPD3 and N-CAPG2, are capable of recognizing H4K20me1, and ChIP-seq. analysis demonstrate a significant overlap of Condensin II and H4K20me1 sites in mitotic HeLa cells. Thus, the identification and characterization of an H4K20me1 demethylase, PHF8, has revealed an intimate link between this enzyme and two distinct events in cell cycle progression.
 
Overall design unsynchronized HeLa cells were used to profile H3K4me2 and E2F1; unsynchronized or G1 or G1/S synchronized HeLa cells were used to profile PHF8; M phase synchronized HeLa cells were used to profile SMC4 and H4K20me1
 
Contributor(s) Liu W, Tanasa B, Tyurina OV, Zhou TY, Gassmann R, Liu WT, Ohgi KA, Benner C, Garcia-Bassets I, Aggarwal AK, Desai A, Dorrestein PC, Glass CK, Rosenfeld MG
Citation(s) 20622854
Submission date Jun 21, 2010
Last update date May 15, 2019
Contact name Michael Rosenfeld
E-mail(s) mrosenfeld@ucsd.edu
Phone 8585345858
Fax 8585348180
URL http://rosenfeldlab.ucsd.edu/
Organization name HHMI/UCSD
Department School of Medicine
Lab Michael G Rosenfeld
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (7)
GSM558468 H3K4me2_HeLa_ChIPSeq
GSM558469 E2F1_HeLa_ChIPSeq
GSM558470 PHF8_HeLa_unsyn_ChIPSeq
This SubSeries is part of SuperSeries:
GSE22400 PHF8 mediates histone demethylation events in cell cycle progression
Relations
SRA SRP002686
BioProject PRJNA129265

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Supplementary file Size Download File type/resource
GSE22478_RAW.tar 2.1 Gb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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