NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE223770 Query DataSets for GSE223770
Status Public on Apr 03, 2024
Title Linking CRISPR/Cas9 double-strand break profiles to gene editing precision with BreakTag [hiplex2]
Organism Homo sapiens
Experiment type Other
Summary Here we developed BreakTag, a versatile, highly parallel and scissile-aware methodology for the profiling of Cas9-induced DNA double strand break (DSBs), to identify molecular determinants influencing Cas9 incisions
 
Overall design Characterization of the scissile profile of 1400 genomic gRNA-targets (HiPlex2 library) using BreakTag
 
Contributor(s) Longo GM, Sayols S, Roukos V
Citation(s) 38740992
Submission date Jan 26, 2023
Last update date Jul 03, 2024
Contact name Sergi Sayols
Organization name Institute of Molecular Biology, Mainz
Street address Ackermannweg 4
City Mainz
ZIP/Postal code 55128
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (10)
GSM6995188 HEK293 cells, Pool of sgRNAs no. one
GSM6995189 HEK293 cells, Pool of sgRNAs no. two
GSM6995190 HEK293 cells, Pool of sgRNAs no. three
This SubSeries is part of SuperSeries:
GSE223772 Linking CRISPR/Cas9 double-strand break profiles to gene editing precision with BreakTag
Relations
BioProject PRJNA928349

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223770_RAW.tar 983.6 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap