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Series GSE223768 Query DataSets for GSE223768
Status Public on Apr 03, 2024
Title Linking CRISPR/Cas9 double-strand break profiles to gene editing precision with BreakTag [hiplex1]
Organism Homo sapiens
Experiment type Other
Summary Here we developed BreakTag, a versatile, highly parallel and scissile-aware methodology for the profiling of Cas9-induced DNA double strand break (DSBs), to identify molecular determinants influencing Cas9 incisions
 
Overall design Map the off-target landscape and characterization of the scissile profile of 1491 genomic gRNA-targets (HiPlex1 library) using BreakTag
 
Contributor(s) Longo GM, Sayols S, Roukos V
Citation(s) 38740992
Submission date Jan 26, 2023
Last update date Jul 03, 2024
Contact name Sergi Sayols
Organization name Institute of Molecular Biology, Mainz
Street address Ackermannweg 4
City Mainz
ZIP/Postal code 55128
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (11)
GSM6995147 HepG2 cells, Pool of sgRNAs no. one
GSM6995148 HepG2 cells, Pool of sgRNAs no. two
GSM6995149 HepG2 cells, Pool of sgRNAs no. three
This SubSeries is part of SuperSeries:
GSE223772 Linking CRISPR/Cas9 double-strand break profiles to gene editing precision with BreakTag
Relations
BioProject PRJNA928359

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223768_RAW.tar 1.5 Gb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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