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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 22, 2023 |
| Title |
BTLA NTN scRNAseq |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Goal is to investigate the molecular changes in renal leukocytes during nephrotoxic nephritis in BTLA-KO mice compared to wild-type mice
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| Overall design |
2 vs 2 biological replicates: 2 BTLA-KO samples vs 2 wild type control samples
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| Contributor(s) |
Diefenhardt P, Braumann M, Schömig T, Trinsch B, Sierra-Gonzalez C, Becker-Gotot J, Völker LA, Hawiger D, Abdallah AT, Schermer B, Göbel H, Brinkkötter P, Kurts C, Benzing T, Brähler S |
| Citation(s) |
37367205 |
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| Submission date |
Jan 23, 2023 |
| Last update date |
Jul 24, 2023 |
| Contact name |
Ali T Abdallah |
| Organization name |
University of Cologne
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| Department |
Medical Faculty
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| Lab |
CECAD
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| Street address |
Joseph Stelzmann Str. 26
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| City |
Cologne |
| ZIP/Postal code |
50931 |
| Country |
Germany |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (4)
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| GSM6958403 |
Nephrotoxic Nephritis sample of BTLA-KO mouse (replicate 1) |
| GSM6958404 |
Nephrotoxic Nephritis sample of BTLA-KO mouse (replicate 2) |
| GSM6958405 |
Nephrotoxic Nephritis sample of wild type mouse (replicate 1) |
| GSM6958406 |
Nephrotoxic Nephritis sample of wild type mouse (replicate 2) |
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| Relations |
| BioProject |
PRJNA926654 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE223534_Cell_Type_Annotation_T_cells.csv.gz |
21.6 Kb |
(ftp)(http) |
CSV |
| GSE223534_Cell_Type_Annotation_all_immune_cells.csv.gz |
113.3 Kb |
(ftp)(http) |
CSV |
| GSE223534_RAW.tar |
61.6 Mb |
(http)(custom) |
TAR (of CSV) |
| GSE223534_gex.combined.filtered.csv.gz |
49.6 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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