|
| Status |
Public on Feb 10, 2023 |
| Title |
ATAC-Seq analysis of the chromatin accessibilities in C9HRE ALS/FTD patient cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-seq was utilized to profile the chromatin status in ALS/FTD patient cells carrying the hexanuleotide repeat expansion in C9orf72.
|
| |
|
| Overall design |
ATAC-seq was performed on control and C9orf72 HRE B lymphocytes and iPSCs-derived motor neurons.
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| |
|
| Contributor(s) |
Liu Y, Liu H, Wang J |
| Citation(s) |
36822200 |
| |
| Submission date |
Jan 19, 2023 |
| Last update date |
May 12, 2023 |
| Contact name |
Yang Liu |
| E-mail(s) |
liuyang19870210@outlook.com
|
| Organization name |
Johns Hopkins University
|
| Department |
Biochemistry and Molecular Biology
|
| Lab |
Wang Lab
|
| Street address |
615 N. Wolfe Street
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21211 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (6)
|
| GSM6944027 |
ATAC-seq for B lymphocytes from a healthy people |
| GSM6944028 |
ATAC-seq for C9HRE B lymphocytes from a ALS/FTD patient |
| GSM6944029 |
ATAC-seq for iPSCs-derived motor neurons from a healthy people_1 |
| GSM6944030 |
ATAC-seq for iPSCs-derived motor neurons from a healthy people_2 |
| GSM6944031 |
ATAC-seq for iPSCs-derived motor neurons from a ALS/FTD patient carrying the C9orf72 HRE mutation_1 |
| GSM6944032 |
ATAC-seq for iPSCs-derived motor neurons from a ALS/FTD patient carrying the C9orf72 HRE mutation_2 |
|
| This SubSeries is part of SuperSeries: |
| GSE223259 |
Chromatin accessibilities in C9HRE ALS/FTD patient cells |
|
| Relations |
| BioProject |
PRJNA925663 |
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