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GEO accession:
Series GSE223050
Query DataSets for GSE223050
Status
Public on Jul 15, 2024
Title
The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1–linked chromatin opening
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38959897
Submission date
Jan 17, 2023
Last update date
Jul 16, 2024
Contact name
Christian Nefzger
Organization name
The University of Queensland
Department
Institute for Molecular Biology
Lab
Cellular Reprogramming and Ageing
Street address
306 Carmody Road
City
Brisbane
State/province
Queensland
ZIP/Postal code
4067
Country
Australia
Platforms (1)
GPL28457
DNBSEQ-G400 (Mus musculus)
Samples (336)
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GSM6840551
Adipocytes_O_2
GSM6840552
Adipocytes_O_3
GSM6840553
Adipocytes_O_4
GSM6840554
Adipocytes_Y_1
GSM6840555
Adipocytes_Y_2
GSM6840556
Adipocytes_Y_3
GSM6840557
B-cells_O_1
GSM6840558
B-cells_O_2
GSM6840559
B-cells_O_3
GSM6840560
B-cells_O_4
GSM6840561
B-cells_Y_1
GSM6840562
B-cells_Y_2
GSM6840563
B-cells_Y_3
GSM6840564
B-cells_Y_4
GSM6840565
Beta-cells_O_1
GSM6840566
Beta-cells_O_2
GSM6840567
Beta-cells_O_3
GSM6840568
Beta-cells_Y_1
GSM6840569
Beta-cells_Y_2
GSM6840570
Beta-cells_Y_3
GSM6840571
Beta-cells_Y_4
GSM6840572
Beta-cells_Y_5
GSM6840573
Brain-endothelial_O_1
GSM6840574
Brain-endothelial_O_2
GSM6840575
Brain-endothelial_O_3
GSM6840576
Brain-endothelial_O_4
GSM6840577
Brain-endothelial_Y_1
GSM6840578
Brain-endothelial_Y_2
GSM6840579
Brain-endothelial_Y_3
GSM6840580
Brain-endothelial_Y_4
GSM6840581
CD4-Memory_O_1
GSM6840582
CD4-Memory_O_2
GSM6840583
CD4-Memory_O_3
GSM6840584
CD4-Memory_O_4
GSM6840585
CD4-Memory_Y_1
GSM6840586
CD4-Memory_Y_2
GSM6840587
CD4-Memory_Y_3
GSM6840588
CD4-Memory_Y_4
GSM6840589
CD4-Naive_O_1
GSM6840590
CD4-Naive_O_2
GSM6840591
CD4-Naive_O_3
GSM6840592
CD4-Naive_Y_1
GSM6840593
CD4-Naive_Y_2
GSM6840594
CD4-Naive_Y_3
GSM6840595
CD4-Naive_Y_4
GSM6840596
CD8-Memory_O_1
GSM6840597
CD8-Memory_O_2
GSM6840598
CD8-Memory_O_3
GSM6840599
CD8-Memory_O_4
GSM6840600
CD8-Memory_Y_1
GSM6840601
CD8-Memory_Y_2
GSM6840602
CD8-Memory_Y_3
GSM6840603
CD8-Memory_Y_4
GSM6840604
CD8-Naive_O_1
GSM6840605
CD8-Naive_O_2
GSM6840606
CD8-Naive_O_3
GSM6840607
CD8-Naive_O_4
GSM6840608
CD8-Naive_Y_1
GSM6840609
CD8-Naive_Y_2
GSM6840610
CD8-Naive_Y_3
GSM6840611
CD8-Naive_Y_4
GSM6840612
CD8-Virtual-Mem_O_1
GSM6840613
CD8-Virtual-Mem_O_2
GSM6840614
CD8-Virtual-Mem_O_3
GSM6840615
CD8-Virtual-Mem_O_4
GSM6840616
CD8-Virtual-Mem_Y_1
GSM6840617
CD8-Virtual-Mem_Y_2
GSM6840618
CD8-Virtual-Mem_Y_3
GSM6840619
CD8-Virtual-Mem_Y_4
GSM6840620
Kidney-endothelial_O_1
GSM6840621
Kidney-endothelial_O_2
GSM6840622
Kidney-endothelial_O_4
GSM6840623
Kidney-endothelial_Y_1
GSM6840624
Kidney-endothelial_Y_2
GSM6840625
Kidney-endothelial_Y_4
GSM6840626
Kidney-endothelial_Y_5
GSM6840627
HSC_O_1
GSM6840628
HSC_O_2
GSM6840629
HSC_O_3
GSM6840630
HSC_O_4
GSM6840631
HSC_Y_1
GSM6840632
HSC_Y_2
GSM6840633
HSC_Y_3
GSM6840634
Keratinocytes_O_1
GSM6840635
Keratinocytes_O_2
GSM6840636
Keratinocytes_O_3
GSM6840637
Keratinocytes_O_4
GSM6840638
Keratinocytes_Y_1
GSM6840639
Keratinocytes_Y_2
GSM6840640
Keratinocytes_Y_3
GSM6840641
Keratinocytes_Y_4
GSM6840642
Liver-progenitors_O_1
GSM6840643
Liver-progenitors_O_2
GSM6840644
Liver-progenitors_O_3
GSM6840645
Liver-progenitors_Y_1
GSM6840646
Liver-progenitors_Y_2
GSM6840647
Liver-progenitors_Y_3
GSM6840648
Lymph-endothelial_O_1
GSM6840649
Lymph-endothelial_O_2
GSM6840650
Lymph-endothelial_O_3
GSM6840651
Lymph-endothelial_Y_1
GSM6840652
Lymph-endothelial_Y_2
GSM6840653
Lymph-endothelial_Y_3
GSM6840654
Lymph-fibroblasts_O_1
GSM6840655
Lymph-fibroblasts_O_2
GSM6840663
Muscle-fibroblasts_O_2
GSM6840665
Muscle-fibroblasts_O_4
GSM6840667
Muscle-fibroblasts_Y_2
GSM6840668
Muscle-fibroblasts_Y_3
GSM6840669
Muscle-fibroblasts_Y_4
GSM6840670
Neurons_O_1
GSM6840671
Neurons_O_2
GSM6840672
Neurons_O_3
GSM6840673
Neurons_Y_1
GSM6840674
Neurons_Y_2
GSM6840675
Neurons_Y_3
GSM6840676
Fat-progenitors_O_1
GSM6840677
Fat-progenitors_O_2
GSM6840678
Fat-progenitors_O_4
GSM6840679
Fat-progenitors_Y_1
GSM6840680
Fat-progenitors_Y_2
GSM6840685
Satellite-stem-cells_O_4
GSM6840686
Satellite-stem-cells_Y_1
GSM6840687
Satellite-stem-cells_Y_2
GSM6840688
Satellite-stem-cells_Y_3
GSM6840689
Thymic-epithelial_O_1
GSM6840690
Thymic-epithelial_O_2
GSM6840691
Thymic-epithelial_O_3
GSM6840692
Thymic-epithelial_Y_1
GSM6840693
Thymic-epithelial_Y_2
GSM6840694
Thymic-epithelial_Y_3
GSM6840695
Thymic-epithelial_Y_4
GSM6840696
Thymic-fibroblasts_O_1
GSM6840697
Thymic-fibroblasts_O_2
GSM6840698
Thymic-fibroblasts_O_3
GSM6840699
Thymic-fibroblasts_O_4
GSM6840700
Thymic-fibroblasts_Y_1
GSM6840701
Thymic-fibroblasts_Y_2
GSM6840702
Thymic-fibroblasts_Y_3
GSM6840703
Thymic-fibroblasts_Y_4
GSM6840705
Kidney-tubular_O_2
GSM6840708
Kidney-tubular_Y_2
GSM6840709
Kidney-tubular_Y_3
GSM6840710
Kidney-tubular_Y_4
GSM6840711
Skin-fibroblasts_O_1
GSM6840712
Skin-fibroblasts_O_2
GSM6840713
Skin-fibroblasts_O_3
GSM6840714
Skin-fibroblasts_Y_1
GSM6840715
Skin-fibroblasts_Y_2
GSM6840716
Skin-fibroblasts_Y_3
GSM8377198
RNA-Seq Adipocytes_O_1
GSM8377199
RNA-Seq Adipocytes_O_2
GSM8377200
RNA-Seq Adipocytes_O_3
GSM8377201
RNA-Seq Adipocytes_O_4
GSM8377202
RNA-Seq Adipocytes_O_5
GSM8377203
RNA-Seq Adipocytes_Y_1
GSM8377204
RNA-Seq Adipocytes_Y_2
GSM8377205
RNA-Seq Adipocytes_Y_3
GSM8377206
RNA-Seq B-cells_O_1
GSM8377207
RNA-Seq B-cells_O_2
GSM8377208
RNA-Seq B-cells_O_3
GSM8377209
RNA-Seq B-cells_O_4
GSM8377210
RNA-Seq B-cells_Y_1
GSM8377211
RNA-Seq B-cells_Y_2
GSM8377212
RNA-Seq B-cells_Y_3
GSM8377213
RNA-Seq B-cells_Y_4
GSM8377214
RNA-Seq B-cells_Y_5
GSM8377215
RNA-Seq Beta-cells_O_1
GSM8377216
RNA-Seq Beta-cells_O_2
GSM8377217
RNA-Seq Beta-cells_O_3
GSM8377218
RNA-Seq Beta-cells_O_4
GSM8377219
RNA-Seq Beta-cells_Y_1
GSM8377220
RNA-Seq Beta-cells_Y_3
GSM8377221
RNA-Seq Beta-cells_Y_4
GSM8377222
RNA-Seq Beta-cells_Y_5
GSM8377223
RNA-Seq Brain_endothelial_O_1
GSM8377224
RNA-Seq Brain_endothelial_O_2
GSM8377225
RNA-Seq Brain_endothelial_O_3
GSM8377226
RNA-Seq Brain_endothelial_O_4
GSM8377227
RNA-Seq Brain_endothelial_Y_1
GSM8377228
RNA-Seq Brain_endothelial_Y_3
GSM8377229
RNA-Seq Brain_endothelial_Y_4
GSM8377230
RNA-Seq CD4_Memory_O_1
GSM8377231
RNA-Seq CD4_Memory_O_2
GSM8377232
RNA-Seq CD4_Memory_O_3
GSM8377233
RNA-Seq CD4_Memory_O_4
GSM8377234
RNA-Seq CD4_Memory_O_5
GSM8377235
RNA-Seq CD4_Memory_Y_1
GSM8377236
RNA-Seq CD4_Memory_Y_2
GSM8377237
RNA-Seq CD4_Memory_Y_3
GSM8377238
RNA-Seq CD4_Memory_Y_4
GSM8377239
RNA-Seq CD4_Memory_Y_5
GSM8377240
RNA-Seq CD4_Naive_O_1
GSM8377241
RNA-Seq CD4_Naive_O_2
GSM8377242
RNA-Seq CD4_Naive_O_3
GSM8377243
RNA-Seq CD4_Naive_Y_1
GSM8377244
RNA-Seq CD4_Naive_Y_2
GSM8377245
RNA-Seq CD4_Naive_Y_3
GSM8377246
RNA-Seq CD4_Naive_Y_4
GSM8377247
RNA-Seq CD8_Memory_O_1
GSM8377248
RNA-Seq CD8_Memory_O_2
GSM8377249
RNA-Seq CD8_Memory_O_3
GSM8377250
RNA-Seq CD8_Memory_Y_2
GSM8377251
RNA-Seq CD8_Memory_Y_3
GSM8377252
RNA-Seq CD8_Memory_Y_4
GSM8377253
RNA-Seq CD8_Naive_O_1
GSM8377254
RNA-Seq CD8_Naive_O_2
GSM8377255
RNA-Seq CD8_Naive_O_3
GSM8377256
RNA-Seq CD8_Naive_Y_1
GSM8377257
RNA-Seq CD8_Naive_Y_2
GSM8377258
RNA-Seq CD8_Naive_Y_3
GSM8377259
RNA-Seq CD8_Naive_Y_4
GSM8377260
RNA-Seq CD8_Virtual_Mem_O_1
GSM8377261
RNA-Seq CD8_Virtual_Mem_O_2
GSM8377262
RNA-Seq CD8_Virtual_Mem_O_3
GSM8377263
RNA-Seq CD8_Virtual_Mem_O_4
GSM8377264
RNA-Seq CD8_Virtual_Mem_O_5
GSM8377265
RNA-Seq CD8_Virtual_Mem_Y_1
GSM8377266
RNA-Seq CD8_Virtual_Mem_Y_2
GSM8377267
RNA-Seq CD8_Virtual_Mem_Y_3
GSM8377268
RNA-Seq CD8_Virtual_Mem_Y_4
GSM8377269
RNA-Seq CD8_Virtual_Mem_Y_5
GSM8377270
RNA-Seq Fat_progenitors_O_1
GSM8377271
RNA-Seq Fat_progenitors_O_2
GSM8377272
RNA-Seq Fat_progenitors_O_3
GSM8377273
RNA-Seq Fat_progenitors_Y_1
GSM8377274
RNA-Seq Fat_progenitors_Y_2
GSM8377275
RNA-Seq Fat_progenitors_Y_3
GSM8377276
RNA-Seq Fat_progenitors_Y_4
GSM8377277
RNA-Seq HSC_O_3
GSM8377278
RNA-Seq HSC_O_4
GSM8377279
RNA-Seq HSC_O_5
GSM8377280
RNA-Seq HSC_O_6
GSM8377281
RNA-Seq HSC_O_7
GSM8377282
RNA-Seq HSC_O_8
GSM8377283
RNA-Seq HSC_O_9
GSM8377284
RNA-Seq HSC_Y_1
GSM8377285
RNA-Seq HSC_Y_2
GSM8377286
RNA-Seq HSC_Y_3
GSM8377287
RNA-Seq HSC_Y_4
GSM8377288
RNA-Seq Keratinocytes_O_1
GSM8377289
RNA-Seq Keratinocytes_O_2
GSM8377290
RNA-Seq Keratinocytes_O_3
GSM8377291
RNA-Seq Keratinocytes_Y_1
GSM8377292
RNA-Seq Keratinocytes_Y_2
GSM8377293
RNA-Seq Keratinocytes_Y_3
GSM8377294
RNA-Seq Keratinocytes_Y_4
GSM8377295
RNA-Seq Kidney_endothelial_O_1
GSM8377296
RNA-Seq Kidney_endothelial_O_2
GSM8377297
RNA-Seq Kidney_endothelial_O_3
GSM8377298
RNA-Seq Kidney_endothelial_Y_1
GSM8377299
RNA-Seq Kidney_endothelial_Y_2
GSM8377300
RNA-Seq Kidney_endothelial_Y_3
GSM8377301
RNA-Seq Kidney_endothelial_Y_4
GSM8377302
RNA-Seq Kidney_tubular_O_1
GSM8377303
RNA-Seq Kidney_tubular_O_2
GSM8377304
RNA-Seq Kidney_tubular_O_3
GSM8377305
RNA-Seq Kidney_tubular_O_4
GSM8377306
RNA-Seq Kidney_tubular_Y_1
GSM8377307
RNA-Seq Kidney_tubular_Y_2
GSM8377308
RNA-Seq Kidney_tubular_Y_3
GSM8377309
RNA-Seq Liver_progenitors_O_1
GSM8377310
RNA-Seq Liver_progenitors_O_2
GSM8377311
RNA-Seq Liver_progenitors_O_3
GSM8377312
RNA-Seq Liver_progenitors_Y_1
GSM8377313
RNA-Seq Liver_progenitors_Y_2
GSM8377314
RNA-Seq Liver_progenitors_Y_3
GSM8377315
RNA-Seq Lymph_endothelial_O_1
GSM8377316
RNA-Seq Lymph_endothelial_O_2
GSM8377317
RNA-Seq Lymph_endothelial_O_3
GSM8377318
RNA-Seq Lymph_endothelial_Y_2
GSM8377319
RNA-Seq Lymph_endothelial_Y_3
GSM8377320
RNA-Seq Lymph_endothelial_Y_4
GSM8377321
RNA-Seq Lymph_fibroblasts_O_1
GSM8377322
RNA-Seq Lymph_fibroblasts_O_2
GSM8377323
RNA-Seq Lymph_fibroblasts_O_3
GSM8377324
RNA-Seq Lymph_fibroblasts_Y_1
GSM8377325
RNA-Seq Lymph_fibroblasts_Y_2
GSM8377326
RNA-Seq Lymph_fibroblasts_Y_3
GSM8377327
RNA-Seq Muscle_fibroblasts_O_1
GSM8377328
RNA-Seq Muscle_fibroblasts_O_2
GSM8377329
RNA-Seq Muscle_fibroblasts_O_3
GSM8377330
RNA-Seq Muscle_fibroblasts_Y_1
GSM8377331
RNA-Seq Muscle_fibroblasts_Y_2
GSM8377332
RNA-Seq Muscle_fibroblasts_Y_3
GSM8377333
RNA-Seq Neurons_O_1
GSM8377334
RNA-Seq Neurons_O_2
GSM8377335
RNA-Seq Neurons_O_4
GSM8377336
RNA-Seq Neurons_Y_3
GSM8377337
RNA-Seq Neurons_Y_4
GSM8377338
RNA-Seq Satellite_stem_cells_O_1
GSM8377339
RNA-Seq Satellite_stem_cells_O_2
GSM8377340
RNA-Seq Satellite_stem_cells_O_3
GSM8377341
RNA-Seq Satellite_stem_cells_Y_1
GSM8377342
RNA-Seq Satellite_stem_cells_Y_2
GSM8377343
RNA-Seq Satellite_stem_cells_Y_3
GSM8377344
RNA-Seq Skin_fibroblasts_O_1
GSM8377345
RNA-Seq Skin_fibroblasts_O_2
GSM8377346
RNA-Seq Skin_fibroblasts_O_3
GSM8377347
RNA-Seq Skin_fibroblasts_Y_1
GSM8377348
RNA-Seq Skin_fibroblasts_Y_2
GSM8377349
RNA-Seq Skin_fibroblasts_Y_3
GSM8377350
RNA-Seq Thymic_epithelial_O_1
GSM8377351
RNA-Seq Thymic_epithelial_O_2
GSM8377352
RNA-Seq Thymic_epithelial_O_3
GSM8377353
RNA-Seq Thymic_epithelial_O_4
GSM8377354
RNA-Seq Thymic_epithelial_O_5
GSM8377355
RNA-Seq Thymic_epithelial_Y_1
GSM8377356
RNA-Seq Thymic_epithelial_Y_2
GSM8377357
RNA-Seq Thymic_epithelial_Y_3
GSM8377358
RNA-Seq Thymic_epithelial_Y_4
GSM8377359
RNA-Seq Thymic_epithelial_Y_5
GSM8377360
RNA-Seq Thymic_fibroblasts_O_1
GSM8377361
RNA-Seq Thymic_fibroblasts_O_2
GSM8377362
RNA-Seq Thymic_fibroblasts_O_3
GSM8377363
RNA-Seq Thymic_fibroblasts_O_4
GSM8377364
RNA-Seq Thymic_fibroblasts_Y_1
GSM8377365
RNA-Seq Thymic_fibroblasts_Y_2
GSM8377366
RNA-Seq Thymic_fibroblasts_Y_3
GSM8377367
RNA-Seq Thymic_fibroblasts_Y_4
GSM8386489
Lymph-fibroblasts_O_3
GSM8386490
Lymph-fibroblasts_O_4
GSM8386491
Lymph-fibroblasts_Y_1
GSM8386492
Lymph-fibroblasts_Y_2
GSM8386493
Lymph-fibroblasts_Y_3
GSM8386494
Lymph-fibroblasts_Y_4
GSM8386495
Muscle-fibroblasts_O_1
GSM8386496
Muscle-fibroblasts_O_3
GSM8386497
Muscle-fibroblasts_Y_1
GSM8386498
Fat-progenitors_Y_4
GSM8386499
Satellite-stem-cells_O_1
GSM8386500
Satellite-stem-cells_O_2
GSM8386501
Satellite-stem-cells_O_3
GSM8386502
Kidney-tubular_O_1
GSM8386503
Kidney-tubular_O_3
GSM8386504
Kidney-tubular_Y_1
This SuperSeries is composed of the following SubSeries:
GSE221034
Bulk Omni-ATAC-seq in young (2 months) and aged (22-24 months) mice across 23 cell-types
GSE223049
Bulk RNA-seq in young (2 months) and aged (22-24 months) mice across 23 cell-types
Relations
BioProject
PRJNA924763
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE223050_RAW.tar
47.3 Gb
(http)
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TAR (of BED, BW, NARROWPEAK)
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