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Series GSE222952 Query DataSets for GSE222952
Status Public on Jan 01, 2024
Title BRD9-SMAD2/3 orchestrates stemness and tumorigenesis in pancreatic ductal adenocarcinoma drives human dilated cardiomyopathy
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary By using a small molecule compound library targeting epigenetic enzymes we have identified BRD9 enzyme for eliminating CSCs. Genomic and proteomic studies revealed that BRD9/BAF complex regulates expression of stemness factors and chemoresistance by cooperating with TGFβ/Activin-SMAD2/3 signalling pathway. Chemical inhibition and genetic loss of function of BDR9 blocks the self-renewal of CSCs, reduces CSC invasiveness and resensitizes PDAC CSCs to conventional therapies. Analyses of chromatin architecture showed that BRD9 regulates the 3D chromatin looping between promoters and enhancers of stemness genes and EMT regulators in CSCs. BRD9 inhibition abrogated tumour formation in mice and eliminated CSCs in tumours from pancreatic cancer patients. Collectively, we uncovered BRD9 enzyme as an attractive therapeutic target for re-sensitizing and eliminating CSCs in pancreatic cancer patients.
 
Overall design By using a small molecule compound library targeting epigenetic enzymes we have identified BRD9 enzyme for eliminating CSCs. Genomic and proteomic studies revealed that BRD9/BAF complex regulates expression of stemness factors and chemoresistance by cooperating with TGFβ/Activin-SMAD2/3 signalling pathway. Chemical inhibition and genetic loss of function of BDR9 blocks the self-renewal of CSCs, reduces CSC invasiveness and resensitizes PDAC CSCs to conventional therapies. Analyses of chromatin architecture showed that BRD9 regulates the 3D chromatin looping between promoters and enhancers of stemness genes and EMT regulators in CSCs. BRD9 inhibition abrogated tumour formation in mice and eliminated CSCs in tumours from pancreatic cancer patients. Collectively, we uncovered BRD9 enzyme as an attractive therapeutic target for re-sensitizing and eliminating CSCs in pancreatic cancer patients.
 
Contributor(s) Feng Y, Cai L, Chang C, Liu F, Jiang L, Pauklin S
Citation(s) 37739089
Submission date Jan 16, 2023
Last update date Sep 05, 2024
Contact name Lei Jiang
E-mail(s) altacount55@gmail.com
Organization name Guangdong Provincial People's Hospital
Street address No.106 Zhongshan 2nd Road
City Guangzhou
ZIP/Postal code 510000
Country France
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM6935725 control scRNA-seq
GSM6935726 Gemcitabine scRNA-seq
GSM6935727 I-BRD9 scRNA-seq
Relations
BioProject PRJNA924277

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222952_IBRD9_all_samples_count_matrix_after_QC.csv.gz 54.2 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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