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GEO accession:
Series GSE221519
Query DataSets for GSE221519
Status
Public on Aug 31, 2023
Title
BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37985858
Submission date
Dec 21, 2022
Last update date
Nov 30, 2023
Contact name
Mark Maienschein-Cline
E-mail(s)
mmaiensc@uic.edu
Organization name
University of Illinois at Chicago
Department
Research Resources Center
Lab
Center for Research Informatics
Street address
1819 W Polk Ave, Rm 336 M/C 789
City
Chicago
State/province
IL
ZIP/Postal code
60612
Country
USA
Platforms (2)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (46)
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GSM6879748
ImmatureB.1
GSM6879749
ImmatureB.2
GSM6879750
SpreB-Brwd1KO.1
GSM6879751
SpreB-Brwd1KO.2
GSM6879752
SpreB-WT.1
GSM6879753
SpreB-WT.2
GSM6879754
mm_chip_spreb_CTCF-BRWD1KO.1
GSM6879755
mm_chip_spreb_CTCF-BRWD1KO.2
GSM6879756
mm_chip_spreb_CTCF-WT.1
GSM6879757
mm_chip_spreb_CTCF-WT.2
GSM6879758
mm_chip_spreb_h3k27ac.1
GSM6879759
mm_chip_spreb_h3k27ac.2
GSM6879760
mm_chip_spreb_h3k27ac_brwd1ko.1
GSM6879761
mm_chip_spreb_h3k27ac_brwd1ko.2
GSM6879762
mm_chip_spreb_h3k4me1.1
GSM6879763
mm_chip_spreb_h3k4me1.2
GSM6879764
mm_chip_spreb_h3k4me1_brwd1ko.1
GSM6879765
mm_chip_spreb_h3k4me1_brwd1ko.2
GSM6879766
mm_chip_spreb_NIPBL-ATPneg.1
GSM6879767
mm_chip_spreb_NIPBL-ATPneg.2
GSM6879768
mm_chip_spreb_NIPBL-BRWD1KO.1
GSM6879769
mm_chip_spreb_NIPBL-BRWD1KO.2
GSM6879770
mm_chip_spreb_NIPBL-WT.1
GSM6879771
mm_chip_spreb_NIPBL-WT.2
GSM6879772
mm_chip_spreb_RAD21-ATPneg.1
GSM6879773
mm_chip_spreb_RAD21-ATPneg.2
GSM6879774
mm_chip_spreb_RAD21-BRWD1KO.1
GSM6879775
mm_chip_spreb_RAD21-BRWD1KO.2
GSM6879776
mm_chip_spreb_RAD21-WT.1
GSM6879777
mm_chip_spreb_RAD21-WT.2
GSM6879778
mm_chip_spreb_SMC3-ATPneg.1
GSM6879779
mm_chip_spreb_SMC3-ATPneg.2
GSM6879780
mm_chip_spreb_SMC3-BRWD1KO.1
GSM6879781
mm_chip_spreb_SMC3-BRWD1KO.2
GSM6879782
mm_chip_spreb_SMC3-WT.1
GSM6879783
mm_chip_spreb_SMC3-WT.2
GSM6879784
mm_chip_spreb_WAPL-ATPneg.1
GSM6879785
mm_chip_spreb_WAPL-ATPneg.2
GSM6879786
mm_chip_spreb_WAPL-BRWD1KO.1
GSM6879787
mm_chip_spreb_WAPL-BRWD1KO.2
GSM6879788
mm_chip_spreb_WAPL-WT.1
GSM6879789
mm_chip_spreb_WAPL-WT.2
GSM6879790
mm_input_spreb_BRWD1KO.1
GSM6879791
mm_input_spreb_BRWD1KO.2
GSM6879792
mm_input_spreb_WT.1
GSM6879793
mm_input_spreb_WT.2
This SuperSeries is composed of the following SubSeries:
GSE221517
BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes (Hi-C)
GSE221518
BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes (ChIP-Seq)
Relations
BioProject
PRJNA914720
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE221519_RAW.tar
27.1 Gb
(http)
(custom)
TAR (of BED, BW, HIC)
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