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Series GSE218988 Query DataSets for GSE218988
Status Public on May 24, 2023
Title CRISPR-based epigenome editing screens identify transcriptional and epigenetic regulators of human CD8 T cell function
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37205457, 37945901
Submission date Nov 29, 2022
Last update date Dec 14, 2023
Contact name Sean McCutcheon
E-mail(s) sean.mccutcheon@duke.edu
Phone 7073447178
Organization name Duke University
Department Biomedical Engineering
Lab Charles Gersbach
Street address 101 Science Drive, CIEMAS Rm. 2323
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platforms (3)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (75)
GSM6761464 TF CRISPRi screen donor 1, day 10
GSM6761465 TF CRISPRi screen donor 2, day 10
GSM6761466 TF CRISPRi screen donor 3, day 10
This SuperSeries is composed of the following SubSeries:
GSE218985 CRISPR-based epigenome editing screens identify transcriptional and epigenetic regulators of human CD8 T cell function [CRISPRi/a TF scRNA-seq characterization]
GSE218986 CRISPR-based epigenome editing screens identify transcriptional and epigenetic regulators of human CD8 T cell function [RNA-seq]
GSE218987 CRISPR-based epigenome editing screens identify transcriptional and epigenetic regulators of human CD8 T cell function [ATAC-seq]
Relations
BioProject PRJNA906514

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218988_RAW.tar 3.3 Gb (http)(custom) TAR (of BW, NARROWPEAK, TAR)
SRA Run SelectorHelp
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