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Series GSE218543 Query DataSets for GSE218543
Status Public on Dec 31, 2022
Title An XBP1s-PIM-2 positive feedback loop controls IL-15-mediated survival of natural killer cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We previously reported that XBP1s, an essential transcription factor downstream of IL-15 and AKT signaling, controls cell survival and effector functions of human natural killer (NK) cells. However, the precise mechanisms remain unknown. In this study, by using XBP1 conditional knock-out mice, we found that XBP1s is critical for IL-15-mediated NK cell survival but not proliferation in vitro and in vivo. Mechanistically, XBP1s regulates homeostatic NK cell survival through targeting PIM-2, a critical anti-apoptotic gene, which in turn stabilizes XBP1s protein by phosphorylating it at Thr58. In addition, XBP1s enhances the effector functions and anti-tumor immunity of NK cells by recruiting T-bet to the promoter region of Ifng. Collectively, our findings identify a previously unknown mechanism by which IL-15–XBP1s signaling regulates the survival and effector functions of NK cells.
 
Overall design 5 × 10E6 purified mouse primary NK cells from Il15TgXbp1f/f mice were pretreated with IL-15 (50 ng/ml) for 1 h. chromatin immunoprecipitation coupled with high-throughput DNA sequencing (ChIP-Seq) was performed.
Web link https://pubmed.ncbi.nlm.nih.gov/36897958/
 
Contributor(s) Ma S, Yu J
Citation(s) 36897958
Submission date Nov 22, 2022
Last update date Apr 01, 2023
Contact name Shoubao Ma
E-mail(s) shma@coh.org
Phone 6262182182
Organization name City of Hope
Street address 1500 East Duarte Road
City duarte
State/province California
ZIP/Postal code 91010
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6751673 NK cells_IP_rep1
GSM6751674 NK cells_IP_rep2
GSM6751675 NK cells_Input_rep1
Relations
BioProject PRJNA904273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218543_ChIP_peak_result.txt.gz 388.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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