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Series GSE216795 Query DataSets for GSE216795
Status Public on May 11, 2023
Title Clonal spreading of tumor-infiltrating T cells underlies the durable antitumor effects of PD-1 blockade and anti-CD4 monoclonal antibody: Bulk TCR sequencing
Organism Mus musculus
Experiment type Other
Summary The repertoire of tumor-infiltrating T cells is a novel perspective to characterize effective anti-tumor T cell responses. Previous studies reported that the oligoclonal expansion in tumor T-cell repertoire is associated with anti-tumor effects. However, the contribution of the expansion of diverse T-cell clones remained unclear. We demonstrated that the polyclonal fraction of tumor-reactive T-cell repertoire consisting of relatively minor clones, increased in tumor-bearing mice treated with anti-PD-L1 or anti-CD4 monoclonal antibodies (mAbs), while the oligoclonal fraction consisting of major clones was unchanged. Moreover, the polyclonal fraction was enriched with progenitor exhausted T cells, essential for a durable anti-tumor response, and more dependent on CCR7+ migratory dendritic cells, responsible for priming tumor-reactive T cells in the tumor-draining lymph node (dLN). These results proposed that the expansion of diverse tumor-reactive clones, “clonal spreading,” is an important mechanism by which anti-PD-L1 and anti-CD4 treatments exert robust and durable anti-tumor T-cell responses.
 
Overall design CD8+ PD1-, CD8+ PD1+ Ly108+ Tim3-, CD8+ PD1+ Ly108+ Tim3+, and CD8+ PD1+ Ly108- Tim3+ T cells from tumor, and CD8+ CD44high T cells from dLN were collected from B16F10 tumor-bearing mouse treated with anti-CD4 mAb, anti-PD-L1 mAb or combination of anti-CD4 and anti-PD-L1 mAbs. Bulk TCR sequencing was performed, and T cell clones that overlap between tumor and dLN were identified.
 
Contributor(s) Aoki H, Tsunoda M, Ogiwara H, Shimizu H, Abe H, Ogawa T, Abe T, Shichino S, Matsushima K, Ueha S
Citation(s) 36988477
Submission date Oct 28, 2022
Last update date May 12, 2023
Contact name Hiroyasu Aoki
E-mail(s) haoki-tky@rs.tus.ac.jp
Phone 08013746493
Organization name Tokyo University of Science
Department Research Institute for Biomedical Sciences
Lab Division of Molecular Regulation of Inflammatory and Immune Diseases
Street address 2669 Yamazaki
City Noda
State/province Chiba
ZIP/Postal code 278-0022
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (100)
GSM6693016 B16_CD8_dLN_aCD4_1
GSM6693017 B16_CD8_dLN_aCD4_2
GSM6693018 B16_CD8_dLN_aCD4_3
This SubSeries is part of SuperSeries:
GSE198211 Clonal spreading of tumor-infiltrating T cells underlies the durable antitumor effects of PD-1 blockade and anti-CD4 monoclonal antibody
Relations
BioProject PRJNA895410

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216795_RAW.tar 9.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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