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Series GSE216187 Query DataSets for GSE216187
Status Public on Jan 11, 2024
Title scRNAseq of bone marrow (BM) T cells and hematopoietic stem and progenitor cells (HSPCs) of acute myeloid leukemia patients post allogeneic stem cell transplantation (alloSCT).
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Gene expression profile at single cell level of bone marrow (BM) T cells and hematopoietic stem and progenitor cells (HSPCs) of acute myeloid leukemia patients post allogeneic stem cell transplantation (alloSCT) of patients in complete remission (CR) and relapse (REL).
 
Overall design HSPCs and T cells were isolated using Fluorescence-activated cell sorting (FACS) according to the presence of CD34 and CD3 respectively, and were then analyzed using scRNAseq. Cells from all samples per group were pooled in one 10x reaction.
 
Contributor(s) Mathioudaki A, Wang X, Zaugg J, Pabst C
Citation(s) 38197505
Submission date Oct 20, 2022
Last update date Apr 24, 2024
Contact name Anna Mathioudaki
E-mail(s) annamathioudaki94@gmail.com
Organization name EMBL Heidelberg
Street address Meyerhofstraße 1, 1
City Heidelberg
State/province None / N/A
ZIP/Postal code 69126
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (2)
GSM6660161 BM_CR_123
GSM6660162 BM_REL_123
Relations
BioProject PRJNA892527

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216187_RAW.tar 171.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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