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| Status |
Public on Dec 23, 2022 |
| Title |
KDM8 epigenetically controls cardiac metabolism to prevent initiation of dilated cardiomyopathy |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38665902 |
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| Submission date |
Oct 14, 2022 |
| Last update date |
May 17, 2024 |
| Contact name |
Paul Delgado-Olguin |
| Organization name |
University of Toronto
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| Department |
Molecular Genetics
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| Street address |
686 Bay Street, 10-9400
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A4 |
| Country |
Canada |
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| Platforms (3) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (37)
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| GSM6634215 |
Whole ventricles, Wildtype, 8 weeks, RNA-Seq, Replicate 1 |
| GSM6634216 |
Whole ventricles, Wildtype, 8 weeks, RNA-Seq, Replicate 2 |
| GSM6634217 |
Whole ventricles, Mutant, 8 weeks, RNA-Seq, Replicate 1 |
| GSM6634218 |
Whole ventricles, Mutant, 8 weeks, RNA-Seq, Replicate 2 |
| GSM6634219 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 1 |
| GSM6634220 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 2 |
| GSM6634221 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 3 |
| GSM6634222 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 4 |
| GSM6634223 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 5 |
| GSM6634224 |
Whole ventricles, Wildtype, 16 weeks , untreated, RNA-Seq, Replicate 6 |
| GSM6634225 |
Whole ventricles, Wildtype, 16 weeks , NAD Injection, RNA-Seq, Replicate 1 |
| GSM6634226 |
Whole ventricles, Wildtype, 16 weeks , NAD Injection, RNA-Seq, Replicate 2 |
| GSM6634227 |
Whole ventricles, Wildtype, 16 weeks , NAD Injection, RNA-Seq, Replicate 3 |
| GSM6634228 |
Whole ventricles, Mutant, 16 weeks , untreated, RNA-Seq, Replicate 1 |
| GSM6634229 |
Whole ventricles, Mutant, 16 weeks , untreated, RNA-Seq, Replicate 2 |
| GSM6634230 |
Whole ventricles, Mutant, 16 weeks , untreated, RNA-Seq, Replicate 3 |
| GSM6634231 |
Whole ventricles, Mutant, 16 weeks , NAD Injection, RNA-Seq, Replicate 1 |
| GSM6634232 |
Whole ventricles, Mutant, 16 weeks , NAD Injection, RNA-Seq, Replicate 2 |
| GSM6634233 |
Whole ventricles, Mutant, 16 weeks , NAD Injection, RNA-Seq, Replicate 3 |
| GSM6634234 |
Whole ventricles, Wildtype, 24 weeks, RNA-Seq, Replicate 1 |
| GSM6634235 |
Whole ventricles, Wildtype, 24 weeks, RNA-Seq, Replicate 2 |
| GSM6634236 |
Whole ventricles, Wildtype, 24 weeks, RNA-Seq, Replicate 3 |
| GSM6634237 |
Whole ventricles, Mutant, 24 weeks , RNA-Seq, Replicate 1 |
| GSM6634238 |
Whole ventricles, Mutant, 24 weeks , RNA-Seq, Replicate 2 |
| GSM6634239 |
Whole ventricles, Mutant, 24 weeks , RNA-Seq, Replicate 3 |
| GSM6634240 |
iPSC-CM transfected with GFP-OE plasmid, RNA-Seq, Replicate 1 |
| GSM6634241 |
iPSC-CM transfected with GFP-OE plasmid, RNA-Seq, Replicate 2 |
| GSM6634242 |
iPSC-CM transfected with GFP-OE plasmid, RNA-Seq, Replicate 3 |
| GSM6634243 |
iPSC-CM transfected with TBX15 OHu33746C pcDNA3.1(+)-N-6His , RNA-Seq, Replicate 1 |
| GSM6634244 |
iPSC-CM transfected with TBX15 OHu33746C pcDNA3.1(+)-N-6His , RNA-Seq, Replicate 2 |
| GSM6634245 |
iPSC-CM transfected with TBX15 OHu33746C pcDNA3.1(+)-N-6His , RNA-Seq, Replicate 3 |
| GSM6640373 |
Isolated Cardiomyocytes, Wildtype, 8 weeks, H3K36me2, CUT&Tag, Replicate 1 |
| GSM6640374 |
Isolated Cardiomyocytes, Wildtype, 8 weeks, H3K36me2, CUT&Tag, Replicate 2 |
| GSM6640375 |
Isolated Cardiomyocytes, Wildtype, 8 weeks, H3K36me2, CUT&Tag, Replicate 3 |
| GSM6640376 |
Isolated Cardiomyocytes, Mutant, 8 weeks, H3K36me2, CUT&Tag, Replicate 1 |
| GSM6640377 |
Isolated Cardiomyocytes, Mutant, 8 weeks, H3K36me2, CUT&Tag, Replicate 2 |
| GSM6640378 |
Isolated Cardiomyocytes, Mutant, 8 weeks, H3K36me2, CUT&Tag, Replicate 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE215351 |
KDM8 epigenetically controls cardiac metabolism to prevent initiation of dilated cardiomyopathy [RNA-seq] |
| GSE215793 |
KDM8 epigenetically controls cardiac metabolism to prevent initiation of dilated cardiomyopathy [CUT&Tag] |
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| Relations |
| BioProject |
PRJNA890621 |
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