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Series GSE215353 Query DataSets for GSE215353
Status Public on Jul 05, 2023
Title Epigenetic landscape of Human Brain by Single Nucleus Methylation Sequencing
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Illustrating the cellular architecture of the human brain is critical to understanding its diverse functions and complex animal behaviors. Single nucleus methylation sequencing was applied to regions of human brains. we identified distinct cell clusters and formed them in a hierarchical taxonomy. These clusters include known primary brain cell types and possible sub-types. We use these data to identify the epigenomic characteristics and to define specific regulatory elements for each cell cluster.
 
Overall design Apply snmC-seq3 to brain regions to identify epigenomic landcape of the adult human brains.

This project includes the following series:
GSE167119 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167119
GSE167577 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167577
GSE167978 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167978
GSE168066 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168066
GSE168169 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168169
GSE168482 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168482
GSE168645 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168645
GSE168693 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168693
GSE168734 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168734
GSE168761 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168761
GSE179129 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179129
GSE179610 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179610
GSE179696 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179696
GSE179761 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179761
GSE179971 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179971
GSE180011 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180011
GSE180049 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180049
GSE180293 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180293
GSE195653 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE195653
GSE195672 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE195672
GSE196225 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196225
GSE196291 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196291
GSE196344 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196344
GSE196367 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196367
GSE196419 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196419
GSE196521 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196521
GSE196577 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196577
GSE196603 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196603
GSE199897 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199897
GSE199957 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199957
GSE199972 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199972
GSE200013 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200013
GSE200056 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200056
GSE200121 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200121
GSE200150 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200150
GSE200169 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200169
GSE200232 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200232
GSE200290 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200290
GSE202341 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202341
GSE202393 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202393
GSE202412 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202412
GSE202908 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202908
GSE202970 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202970
GSE202999 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202999
GSE203103 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203103
GSE203133 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203133
GSE203205 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203205
GSE203373 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203373
GSE203616 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203616
GSE204677 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE204677
GSE204713 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE204713
GSE204792 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE204792
GSE204827 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE204827
GSE205705 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205705
GSE205722 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205722
GSE205760 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205760
GSE205789 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205789
GSE205809 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205809
GSE205820 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205820
GSE207507 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207507
GSE207558 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207558
GSE207583 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207583
GSE207599 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207599
GSE207674 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207674
GSE207694 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207694
GSE207752 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207752
GSE207774 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207774
GSE207953 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207953
GSE208024 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208024
GSE208051 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208051
GSE208392 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208392
GSE208553 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208553
GSE208580 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208580
GSE208643 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208643
GSE208673 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208673
GSE208737 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208737
GSE208780 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208780
GSE209544 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209544
GSE209709 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209709
GSE209576 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209576
GSE209830 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209830
GSE209905 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209905
GSE209930 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209930
GSE210907 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210907
GSE211016 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211016
GSE211139 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211139
GSE211239 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211239
GSE211453 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211453
GSE211564 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211564
GSE212268 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212268
GSE212335 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212335
GSE212426 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212426
GSE212555 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212555
GSE212612 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212612
GSE212764 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212764
GSE212781 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212781
GSE212830 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212830
GSE212850 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212850
GSE212932 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212932
GSE212967 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212967
GSE213027 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213027
GSE216539 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216539
GSE216615 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216615
GSE216696 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216696
GSE216778 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216778
GSE216816 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216816
GSE216938 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216938
GSE217228 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217228
GSE217335 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217335
GSE218321 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE218321
GSE218495 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE218495
GSE219006 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE219006
GSE219113 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE219113
GSE219198 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE219198
GSE219263 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE219263
GSE220086 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220086
GSE220129 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220129
GSE220199 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220199
GSE220431 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220431
GSE220451 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220451
GSE220710 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220710
GSE220767 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220767
GSE220793 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220793
GSE220857 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220857
GSE220904 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220904
GSE220953 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220953
GSE220984 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220984
GSE221010 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221010
GSE221040 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221040
GSE221089 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221089
GSE221175 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221175
GSE221368 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221368
GSE221393 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221393
GSE221445 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221445
GSE221452 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221452
GSE221463 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221463
GSE221487 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221487
GSE221503 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221503
GSE221523 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221523
GSE221556 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221556
GSE221591 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221591
GSE221622 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221622
GSE223206 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223206
GSE223413 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223413
GSE223427 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223427
GSE223431 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223431
GSE223443 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223443
GSE223547 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223547
GSE223563 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223563
GSE223633 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223633
GSE223696 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223696
GSE223737 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223737
GSE228814 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228814
GSE228951 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228951
GSE229061 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229061
GSE229149 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229149
GSE229385 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229385
GSE229625 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229625
GSE229678 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229678
GSE229751 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229751
GSE230015 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230015
GSE230070 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230070
GSE230159 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230159
GSE230209 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230209
GSE230312 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230312
GSE230595 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230595
GSE230684 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230684
GSE230823 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230823
GSE231537 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE231537
GSE231622 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE231622
GSE231722 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE231722
GSE231811 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE231811
GSE232006 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232006
GSE232116 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232116
GSE232210 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232210
GSE232229 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232229
GSE232321 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232321
GSE232420 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232420
GSE232442 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232442
GSE232492 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232492
GSE232494 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232494
GSE232495 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232495
GSE232499 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232499
GSE233154 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE233154
GSE233243 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE233243
GSE233325 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE233325
GSE234066 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234066
GSE234152 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234152
GSE234175 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234175
GSE234208 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234208
GSE234264 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234264
GSE234321 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234321
 
Contributor(s) Tian W, Bartlett A, Liu H, Altshul J, Gomez Castanon R, Nery JR, Chen H, Ecker JR
Citation(s) 37824674
Submission date Oct 12, 2022
Last update date May 15, 2024
Contact name Joseph R Ecker
E-mail(s) ecker@salk.edu
Phone 8584534100
Organization name HHMI-Salk-Institute
Department Genomic Analysis Laboratory
Lab Ecker lab
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 

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Processed data provided as supplementary file

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